Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 GK-202ENST00000378941 458 ntTSL 3 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 RNA5SP421-201ENST00000516864 134 ntBASIC18.91■□□□□ 0.62
CHD9Q3L8U1 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.9■□□□□ 0.62
CHD9Q3L8U1 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 BCAR1-209ENST00000546196 1340 ntBASIC18.9■□□□□ 0.62
CHD9Q3L8U1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHD9Q3L8U1 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.62
CHD9Q3L8U1 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CHD9Q3L8U1 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.89■□□□□ 0.62
CHD9Q3L8U1 ACTG1P14-201ENST00000446382 1122 ntBASIC18.89■□□□□ 0.61
CHD9Q3L8U1 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.89■□□□□ 0.61
CHD9Q3L8U1 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 AC122714.2-201ENST00000502787 707 ntBASIC18.88■□□□□ 0.61
CHD9Q3L8U1 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.88■□□□□ 0.61
CHD9Q3L8U1 FAM58CP-201ENST00000435741 640 ntBASIC18.88■□□□□ 0.61
CHD9Q3L8U1 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 DUX4L27-201ENST00000554796 1261 ntBASIC18.88■□□□□ 0.61
CHD9Q3L8U1 AC008667.4-201ENST00000607370 168 ntBASIC18.88■□□□□ 0.61
CHD9Q3L8U1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 AC025580.3-201ENST00000617932 1424 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms