Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HMGN4O00479 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGN4O00479 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 AL645608.8-201ENST00000606034 2086 ntBASIC16.76■□□□□ 0.27
HMGN4O00479 AC139713.2-201ENST00000641328 2723 ntBASIC16.76■□□□□ 0.27
HMGN4O00479 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGN4O00479 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HMGN4O00479 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGN4O00479 AC090340.1-201ENST00000620778 4980 ntBASIC16.75■□□□□ 0.27
HMGN4O00479 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGN4O00479 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGN4O00479 BCL2-203ENST00000589955 5011 ntBASIC16.75■□□□□ 0.27
HMGN4O00479 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HMGN4O00479 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HMGN4O00479 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
HMGN4O00479 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGN4O00479 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 AL441883.1-201ENST00000566170 1045 ntBASIC16.75■□□□□ 0.27
HMGN4O00479 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGN4O00479 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGN4O00479 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 AC024563.2-201ENST00000603282 481 ntBASIC16.75■□□□□ 0.27
HMGN4O00479 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGN4O00479 AC079602.3-201ENST00000623931 403 ntBASIC16.75■□□□□ 0.27
HMGN4O00479 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
HMGN4O00479 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGN4O00479 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGN4O00479 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGN4O00479 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGN4O00479 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGN4O00479 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HMGN4O00479 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 KRT89P-201ENST00000620027 1478 ntBASIC16.74■□□□□ 0.27
HMGN4O00479 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HMGN4O00479 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGN4O00479 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGN4O00479 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGN4O00479 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGN4O00479 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HMGN4O00479 LIN28AP1-201ENST00000429574 405 ntBASIC16.74■□□□□ 0.27
HMGN4O00479 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGN4O00479 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGN4O00479 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGN4O00479 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGN4O00479 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 AC140113.3-201ENST00000605663 199 ntBASIC16.74■□□□□ 0.27
HMGN4O00479 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HMGN4O00479 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGN4O00479 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 AL391807.1-203ENST00000604392 2365 ntBASIC16.74■□□□□ 0.27
HMGN4O00479 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGN4O00479 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGN4O00479 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGN4O00479 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGN4O00479 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGN4O00479 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HMGN4O00479 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HMGN4O00479 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HMGN4O00479 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGN4O00479 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 ATP5G1P1-201ENST00000448724 379 ntBASIC16.73■□□□□ 0.27
HMGN4O00479 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 COX11P1-201ENST00000489116 835 ntBASIC16.73■□□□□ 0.27
HMGN4O00479 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.73■□□□□ 0.27
HMGN4O00479 AC012306.2-201ENST00000609350 630 ntBASIC16.73■□□□□ 0.27
HMGN4O00479 AL031432.5-201ENST00000641059 760 ntBASIC16.73■□□□□ 0.27
HMGN4O00479 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGN4O00479 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HMGN4O00479 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms