Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 SPTLC1P1-201ENST00000447199 261 ntBASIC13.85□□□□□ -0.19
COL6A5A8TX70 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 AL133338.1-201ENST00000565695 1517 ntBASIC13.85□□□□□ -0.19
COL6A5A8TX70 TBC1D3P5-201ENST00000579401 1545 ntBASIC13.85□□□□□ -0.19
COL6A5A8TX70 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.85□□□□□ -0.19
COL6A5A8TX70 AC004706.3-202ENST00000621574 984 ntBASIC13.85□□□□□ -0.19
COL6A5A8TX70 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL6A5A8TX70 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 AC097493.3-201ENST00000509725 367 ntBASIC13.84□□□□□ -0.19
COL6A5A8TX70 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 AC007064.4-201ENST00000637740 555 ntBASIC13.84□□□□□ -0.19
COL6A5A8TX70 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 MTMR9LP-203ENST00000426597 1545 ntBASIC13.84□□□□□ -0.19
COL6A5A8TX70 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 SLC25A39P2-201ENST00000537614 270 ntBASIC13.84□□□□□ -0.19
COL6A5A8TX70 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 AC092919.2-201ENST00000623631 1645 ntBASIC13.84□□□□□ -0.19
COL6A5A8TX70 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL6A5A8TX70 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC13.84□□□□□ -0.19
COL6A5A8TX70 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL6A5A8TX70 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
COL6A5A8TX70 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 AC125807.1-201ENST00000483097 614 ntBASIC13.83□□□□□ -0.19
COL6A5A8TX70 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 AC106886.1-201ENST00000568660 600 ntBASIC13.83□□□□□ -0.19
COL6A5A8TX70 AC099522.2-201ENST00000607001 744 ntBASIC13.83□□□□□ -0.19
COL6A5A8TX70 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL6A5A8TX70 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC13.83□□□□□ -0.19
COL6A5A8TX70 AC068587.10-201ENST00000641210 219 ntBASIC13.83□□□□□ -0.19
COL6A5A8TX70 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC13.83□□□□□ -0.2
COL6A5A8TX70 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A5A8TX70 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
COL6A5A8TX70 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A5A8TX70 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A5A8TX70 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.83□□□□□ -0.2
COL6A5A8TX70 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
COL6A5A8TX70 AC096633.1-201ENST00000422446 749 ntBASIC13.83□□□□□ -0.2
COL6A5A8TX70 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
COL6A5A8TX70 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.83□□□□□ -0.2
COL6A5A8TX70 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
COL6A5A8TX70 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.83□□□□□ -0.2
COL6A5A8TX70 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A5A8TX70 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A5A8TX70 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms