Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 REXO1L11P-201ENST00000620964 1927 ntBASIC17.8■□□□□ 0.44
MKS1Q9NXB0 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MKS1Q9NXB0 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 ABHD17AP1-201ENST00000358206 933 ntBASIC17.79■□□□□ 0.44
MKS1Q9NXB0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.79■□□□□ 0.44
MKS1Q9NXB0 DDX43P3-201ENST00000441064 443 ntBASIC17.79■□□□□ 0.44
MKS1Q9NXB0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 AC116407.2-201ENST00000613639 860 ntBASIC17.79■□□□□ 0.44
MKS1Q9NXB0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 AC113410.3-201ENST00000623366 203 ntBASIC17.79■□□□□ 0.44
MKS1Q9NXB0 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 HTR7P1-202ENST00000624664 4411 ntBASIC17.79■□□□□ 0.44
MKS1Q9NXB0 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.79■□□□□ 0.44
MKS1Q9NXB0 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 KRT18P29-201ENST00000397031 1267 ntBASIC17.78■□□□□ 0.44
MKS1Q9NXB0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 AC012618.2-201ENST00000428058 849 ntBASIC17.78■□□□□ 0.44
MKS1Q9NXB0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 MIR4651-201ENST00000582622 73 ntBASIC17.78■□□□□ 0.44
MKS1Q9NXB0 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.78■□□□□ 0.44
MKS1Q9NXB0 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MKS1Q9NXB0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MKS1Q9NXB0 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MKS1Q9NXB0 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MKS1Q9NXB0 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
MKS1Q9NXB0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MKS1Q9NXB0 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms