Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 KRT19P2-202ENST00000557173 1012 ntBASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 AC005498.2-205ENST00000593218 784 ntBASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 AC092474.2-201ENST00000424288 719 ntBASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 CIPC-205ENST00000555437 566 ntTSL 3 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF541Q9H0D2 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 AC005082.1-201ENST00000413042 2259 ntBASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 AC138761.1-201ENST00000584393 385 ntBASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF541Q9H0D2 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.45■■□□□ 1.03
ZNF541Q9H0D2 BCAR1-209ENST00000546196 1340 ntBASIC21.45■■□□□ 1.03
ZNF541Q9H0D2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.45■■□□□ 1.03
ZNF541Q9H0D2 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 AL020989.1-201ENST00000422979 469 ntBASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 HLA-J-202ENST00000469281 1241 ntBASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 AC004449.1-201ENST00000564240 433 ntBASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF541Q9H0D2 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 PC-214ENST00000628663 1470 ntTSL 5 BASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 AC007952.6-201ENST00000573168 2673 ntBASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 AC003957.1-201ENST00000625108 2673 ntBASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
ZNF541Q9H0D2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms