Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.24■□□□□ 0.99
RHBDL3P58872 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
RHBDL3P58872 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.24■□□□□ 0.99
RHBDL3P58872 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
RHBDL3P58872 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
RHBDL3P58872 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.24■□□□□ 0.99
RHBDL3P58872 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.24■□□□□ 0.99
RHBDL3P58872 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
RHBDL3P58872 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.24■□□□□ 0.99
RHBDL3P58872 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.23■□□□□ 0.99
RHBDL3P58872 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 AC079776.2-201ENST00000641154 1609 ntBASIC21.23■□□□□ 0.99
RHBDL3P58872 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
RHBDL3P58872 COX5BP2-201ENST00000392354 334 ntBASIC21.23■□□□□ 0.99
RHBDL3P58872 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.23■□□□□ 0.99
RHBDL3P58872 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 AC073592.4-201ENST00000623827 446 ntBASIC21.23■□□□□ 0.99
RHBDL3P58872 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 AC022898.2-201ENST00000616822 1312 ntBASIC21.23■□□□□ 0.99
RHBDL3P58872 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.23■□□□□ 0.99
RHBDL3P58872 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RHBDL3P58872 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
RHBDL3P58872 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.22■□□□□ 0.99
RHBDL3P58872 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RHBDL3P58872 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RHBDL3P58872 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RHBDL3P58872 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
RHBDL3P58872 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RHBDL3P58872 OR7E14P-202ENST00000530490 1290 ntBASIC21.22■□□□□ 0.99
RHBDL3P58872 CYGB-205ENST00000590175 830 ntTSL 3 BASIC21.22■□□□□ 0.99
RHBDL3P58872 MTDHP4-201ENST00000600287 670 ntBASIC21.22■□□□□ 0.99
RHBDL3P58872 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RHBDL3P58872 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RHBDL3P58872 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
RHBDL3P58872 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RHBDL3P58872 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RHBDL3P58872 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.21■□□□□ 0.99
RHBDL3P58872 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.21■□□□□ 0.99
RHBDL3P58872 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.21■□□□□ 0.99
RHBDL3P58872 AL138781.2-201ENST00000617896 1843 ntBASIC21.21■□□□□ 0.99
RHBDL3P58872 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 RPS2P28-201ENST00000314255 741 ntBASIC21.21■□□□□ 0.99
RHBDL3P58872 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RHBDL3P58872 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC21.21■□□□□ 0.99
RHBDL3P58872 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 CD63-204ENST00000546939 779 ntTSL 3 BASIC21.21■□□□□ 0.99
RHBDL3P58872 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RHBDL3P58872 AC107918.4-202ENST00000641623 219 ntBASIC21.21■□□□□ 0.99
RHBDL3P58872 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.21■□□□□ 0.99
RHBDL3P58872 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.21■□□□□ 0.99
RHBDL3P58872 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RHBDL3P58872 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.21■□□□□ 0.99
RHBDL3P58872 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.99
RHBDL3P58872 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.2■□□□□ 0.99
RHBDL3P58872 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
RHBDL3P58872 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
RHBDL3P58872 AC100803.2-201ENST00000562459 1963 ntBASIC21.2■□□□□ 0.98
RHBDL3P58872 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RHBDL3P58872 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.2■□□□□ 0.98
RHBDL3P58872 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RHBDL3P58872 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC21.2■□□□□ 0.98
RHBDL3P58872 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RHBDL3P58872 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.2■□□□□ 0.98
RHBDL3P58872 BX005266.1-201ENST00000473402 457 ntBASIC21.2■□□□□ 0.98
RHBDL3P58872 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RHBDL3P58872 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC21.2■□□□□ 0.98
RHBDL3P58872 AC145285.3-201ENST00000564603 959 ntBASIC21.2■□□□□ 0.98
RHBDL3P58872 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC21.2■□□□□ 0.98
RHBDL3P58872 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RHBDL3P58872 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
RHBDL3P58872 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms