Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
RFC4P35249 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
RFC4P35249 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC22.57■■□□□ 1.2
RFC4P35249 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC22.57■■□□□ 1.2
RFC4P35249 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
RFC4P35249 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
RFC4P35249 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC22.57■■□□□ 1.2
RFC4P35249 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC22.57■■□□□ 1.2
RFC4P35249 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC22.56■■□□□ 1.2
RFC4P35249 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
RFC4P35249 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC22.56■■□□□ 1.2
RFC4P35249 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC22.56■■□□□ 1.2
RFC4P35249 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC22.56■■□□□ 1.2
RFC4P35249 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
RFC4P35249 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
RFC4P35249 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
RFC4P35249 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC4P35249 AC132938.6-201ENST00000623828 1655 ntBASIC22.55■■□□□ 1.2
RFC4P35249 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
RFC4P35249 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC22.55■■□□□ 1.2
RFC4P35249 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC22.55■■□□□ 1.2
RFC4P35249 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
RFC4P35249 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC22.55■■□□□ 1.2
RFC4P35249 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC22.55■■□□□ 1.2
RFC4P35249 CNN2P11-201ENST00000429351 262 ntBASIC22.55■■□□□ 1.2
RFC4P35249 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
RFC4P35249 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC22.55■■□□□ 1.2
RFC4P35249 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
RFC4P35249 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
RFC4P35249 AC004706.3-202ENST00000621574 984 ntBASIC22.55■■□□□ 1.2
RFC4P35249 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC22.55■■□□□ 1.2
RFC4P35249 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC22.55■■□□□ 1.2
RFC4P35249 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC22.55■■□□□ 1.2
RFC4P35249 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
RFC4P35249 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC22.55■■□□□ 1.2
RFC4P35249 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
RFC4P35249 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RFC4P35249 AFG3L1P-217ENST00000557444 2447 ntBASIC22.55■■□□□ 1.2
RFC4P35249 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
RFC4P35249 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC22.54■■□□□ 1.2
RFC4P35249 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 AL645939.2-201ENST00000427340 991 ntBASIC22.54■■□□□ 1.2
RFC4P35249 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC22.54■■□□□ 1.2
RFC4P35249 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
RFC4P35249 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC22.54■■□□□ 1.2
RFC4P35249 AC018845.2-201ENST00000568326 409 ntBASIC22.54■■□□□ 1.2
RFC4P35249 MIR4751-201ENST00000578027 74 ntBASIC22.54■■□□□ 1.2
RFC4P35249 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC22.54■■□□□ 1.2
RFC4P35249 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
RFC4P35249 AC073592.5-201ENST00000624854 528 ntBASIC22.54■■□□□ 1.2
RFC4P35249 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC22.54■■□□□ 1.2
RFC4P35249 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RFC4P35249 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC22.53■■□□□ 1.2
RFC4P35249 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RFC4P35249 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
RFC4P35249 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RFC4P35249 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC22.53■■□□□ 1.2
RFC4P35249 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC22.53■■□□□ 1.2
RFC4P35249 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC22.53■■□□□ 1.2
RFC4P35249 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RFC4P35249 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
RFC4P35249 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC22.53■■□□□ 1.2
RFC4P35249 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RFC4P35249 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC22.53■■□□□ 1.2
RFC4P35249 AC103564.2-201ENST00000432853 1299 ntBASIC22.53■■□□□ 1.2
RFC4P35249 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC22.53■■□□□ 1.2
RFC4P35249 VN2R19P-201ENST00000442399 1052 ntBASIC22.53■■□□□ 1.2
RFC4P35249 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC22.53■■□□□ 1.2
RFC4P35249 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms