Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.15■□□□□ 0.82
USP38Q8NB14 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 AC008687.5-201ENST00000593746 558 ntBASIC20.15■□□□□ 0.82
USP38Q8NB14 AC140113.2-201ENST00000604370 208 ntBASIC20.15■□□□□ 0.82
USP38Q8NB14 AL773604.1-201ENST00000617417 272 ntBASIC20.15■□□□□ 0.82
USP38Q8NB14 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.15■□□□□ 0.82
USP38Q8NB14 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
USP38Q8NB14 AC124864.1-201ENST00000623408 392 ntBASIC20.15■□□□□ 0.82
USP38Q8NB14 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.15■□□□□ 0.82
USP38Q8NB14 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.15■□□□□ 0.82
USP38Q8NB14 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 LINC00167-201ENST00000530583 1419 ntBASIC20.15■□□□□ 0.82
USP38Q8NB14 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.15■□□□□ 0.82
USP38Q8NB14 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.15■□□□□ 0.82
USP38Q8NB14 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP38Q8NB14 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP38Q8NB14 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP38Q8NB14 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP38Q8NB14 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.14■□□□□ 0.81
USP38Q8NB14 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
USP38Q8NB14 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 AL163051.1-201ENST00000569214 1512 ntBASIC20.14■□□□□ 0.81
USP38Q8NB14 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 IGHV3-47-201ENST00000425060 335 ntBASIC20.14■□□□□ 0.81
USP38Q8NB14 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 SAPCD2P3-201ENST00000455031 850 ntBASIC20.14■□□□□ 0.81
USP38Q8NB14 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.14■□□□□ 0.81
USP38Q8NB14 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
USP38Q8NB14 AC064862.7-201ENST00000604520 867 ntBASIC20.14■□□□□ 0.81
USP38Q8NB14 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 AC018470.1-201ENST00000624790 3129 ntBASIC20.14■□□□□ 0.81
USP38Q8NB14 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
USP38Q8NB14 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP38Q8NB14 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
USP38Q8NB14 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.14■□□□□ 0.81
USP38Q8NB14 AL354751.1-201ENST00000412768 1863 ntBASIC20.13■□□□□ 0.81
USP38Q8NB14 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.13■□□□□ 0.81
USP38Q8NB14 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.13■□□□□ 0.81
USP38Q8NB14 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.13■□□□□ 0.81
USP38Q8NB14 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
USP38Q8NB14 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.13■□□□□ 0.81
USP38Q8NB14 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
USP38Q8NB14 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.13■□□□□ 0.81
USP38Q8NB14 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.13■□□□□ 0.81
USP38Q8NB14 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.13■□□□□ 0.81
USP38Q8NB14 RNPS1P1-201ENST00000507437 918 ntBASIC20.13■□□□□ 0.81
USP38Q8NB14 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
USP38Q8NB14 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.13■□□□□ 0.81
USP38Q8NB14 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.13■□□□□ 0.81
USP38Q8NB14 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.13■□□□□ 0.81
USP38Q8NB14 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.13■□□□□ 0.81
USP38Q8NB14 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
USP38Q8NB14 AC099336.1-202ENST00000602961 463 ntBASIC20.13■□□□□ 0.81
USP38Q8NB14 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.13■□□□□ 0.81
USP38Q8NB14 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
USP38Q8NB14 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
USP38Q8NB14 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.13■□□□□ 0.81
USP38Q8NB14 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP38Q8NB14 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.12■□□□□ 0.81
USP38Q8NB14 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
USP38Q8NB14 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 MTMR9LP-203ENST00000426597 1545 ntBASIC20.12■□□□□ 0.81
USP38Q8NB14 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.12■□□□□ 0.81
USP38Q8NB14 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms