Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 AC018712.1-201ENST00000455767 687 ntBASIC19.17■□□□□ 0.66
USP41Q3LFD5 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.17■□□□□ 0.66
USP41Q3LFD5 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.17■□□□□ 0.66
USP41Q3LFD5 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP41Q3LFD5 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 AC023511.2-201ENST00000618803 211 ntBASIC19.16■□□□□ 0.66
USP41Q3LFD5 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 AF228730.7-201ENST00000641842 219 ntBASIC19.16■□□□□ 0.66
USP41Q3LFD5 AC120498.9-201ENST00000339021 3867 ntBASIC19.16■□□□□ 0.66
USP41Q3LFD5 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP41Q3LFD5 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.16■□□□□ 0.66
USP41Q3LFD5 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 ABCD1P5-201ENST00000445663 754 ntBASIC19.15■□□□□ 0.66
USP41Q3LFD5 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 AP005117.1-201ENST00000584346 1413 ntBASIC19.15■□□□□ 0.66
USP41Q3LFD5 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 NEFHP1-201ENST00000412845 2629 ntBASIC19.15■□□□□ 0.66
USP41Q3LFD5 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP41Q3LFD5 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.15■□□□□ 0.66
USP41Q3LFD5 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.14■□□□□ 0.66
USP41Q3LFD5 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.66
USP41Q3LFD5 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
USP41Q3LFD5 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.14■□□□□ 0.66
USP41Q3LFD5 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
USP41Q3LFD5 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP41Q3LFD5 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP41Q3LFD5 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP41Q3LFD5 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP41Q3LFD5 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP41Q3LFD5 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.14■□□□□ 0.65
USP41Q3LFD5 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP41Q3LFD5 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
USP41Q3LFD5 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
USP41Q3LFD5 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
USP41Q3LFD5 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms