Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CDX2Q99626 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CDX2Q99626 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 TIMM8BP1-201ENST00000452384 211 ntBASIC18.78■□□□□ 0.6
CDX2Q99626 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 AC122714.2-201ENST00000502787 707 ntBASIC18.78■□□□□ 0.6
CDX2Q99626 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.78■□□□□ 0.6
CDX2Q99626 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CDX2Q99626 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
CDX2Q99626 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX2Q99626 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.78■□□□□ 0.6
CDX2Q99626 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.78■□□□□ 0.6
CDX2Q99626 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.78■□□□□ 0.6
CDX2Q99626 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX2Q99626 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.77■□□□□ 0.6
CDX2Q99626 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX2Q99626 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX2Q99626 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.77■□□□□ 0.6
CDX2Q99626 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDX2Q99626 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX2Q99626 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CDX2Q99626 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CDX2Q99626 COX5BP8-201ENST00000416911 349 ntBASIC18.77■□□□□ 0.6
CDX2Q99626 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.77■□□□□ 0.6
CDX2Q99626 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.77■□□□□ 0.6
CDX2Q99626 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.77■□□□□ 0.6
CDX2Q99626 KLF2P3-201ENST00000451977 1087 ntBASIC18.77■□□□□ 0.6
CDX2Q99626 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.77■□□□□ 0.6
CDX2Q99626 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDX2Q99626 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.77■□□□□ 0.6
CDX2Q99626 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.77■□□□□ 0.6
CDX2Q99626 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.77■□□□□ 0.6
CDX2Q99626 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.77■□□□□ 0.6
CDX2Q99626 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.77■□□□□ 0.6
CDX2Q99626 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDX2Q99626 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CDX2Q99626 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX2Q99626 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.77■□□□□ 0.6
CDX2Q99626 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CDX2Q99626 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDX2Q99626 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.77■□□□□ 0.59
CDX2Q99626 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CDX2Q99626 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.76■□□□□ 0.59
CDX2Q99626 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CDX2Q99626 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.76■□□□□ 0.59
CDX2Q99626 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CDX2Q99626 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.76■□□□□ 0.59
CDX2Q99626 AC005237.2-201ENST00000434368 219 ntBASIC18.76■□□□□ 0.59
CDX2Q99626 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.76■□□□□ 0.59
CDX2Q99626 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CDX2Q99626 AL805961.1-202ENST00000641562 540 ntBASIC18.76■□□□□ 0.59
CDX2Q99626 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.76■□□□□ 0.59
CDX2Q99626 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.76■□□□□ 0.59
CDX2Q99626 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.76■□□□□ 0.59
CDX2Q99626 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.76■□□□□ 0.59
CDX2Q99626 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX2Q99626 MTMR9LP-203ENST00000426597 1545 ntBASIC18.75■□□□□ 0.59
CDX2Q99626 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.75■□□□□ 0.59
CDX2Q99626 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
CDX2Q99626 LINC01126-201ENST00000623515 1646 ntBASIC18.75■□□□□ 0.59
CDX2Q99626 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CDX2Q99626 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX2Q99626 AC107890.1-201ENST00000422478 521 ntBASIC18.75■□□□□ 0.59
CDX2Q99626 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.75■□□□□ 0.59
CDX2Q99626 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.75■□□□□ 0.59
CDX2Q99626 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.75■□□□□ 0.59
CDX2Q99626 RN7SL692P-201ENST00000464677 288 ntBASIC18.75■□□□□ 0.59
CDX2Q99626 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms