Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCANP13611 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCANP13611 AL121761.2-201ENST00000598007 1648 ntBASIC18.6■□□□□ 0.57
VCANP13611 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
VCANP13611 IGHV3-71-201ENST00000523324 359 ntBASIC18.6■□□□□ 0.57
VCANP13611 AL589182.2-201ENST00000619332 1049 ntBASIC18.6■□□□□ 0.57
VCANP13611 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCANP13611 AC079776.2-201ENST00000641154 1609 ntBASIC18.6■□□□□ 0.57
VCANP13611 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.6■□□□□ 0.57
VCANP13611 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VCANP13611 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VCANP13611 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCANP13611 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
VCANP13611 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.59■□□□□ 0.57
VCANP13611 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VCANP13611 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.59■□□□□ 0.57
VCANP13611 HCG4-201ENST00000418983 998 ntBASIC18.59■□□□□ 0.57
VCANP13611 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.59■□□□□ 0.57
VCANP13611 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.59■□□□□ 0.57
VCANP13611 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.59■□□□□ 0.57
VCANP13611 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.59■□□□□ 0.57
VCANP13611 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.59■□□□□ 0.57
VCANP13611 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.59■□□□□ 0.57
VCANP13611 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 CU639417.3-201ENST00000624240 1404 ntBASIC18.59■□□□□ 0.57
VCANP13611 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.59■□□□□ 0.57
VCANP13611 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.59■□□□□ 0.57
VCANP13611 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 AC004877.2-201ENST00000623941 599 ntBASIC18.59■□□□□ 0.57
VCANP13611 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VCANP13611 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.59■□□□□ 0.57
VCANP13611 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.59■□□□□ 0.57
VCANP13611 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.59■□□□□ 0.57
VCANP13611 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCANP13611 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.58■□□□□ 0.57
VCANP13611 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCANP13611 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VCANP13611 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCANP13611 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.58■□□□□ 0.57
VCANP13611 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
VCANP13611 PIN1P1-201ENST00000412108 996 ntBASIC18.58■□□□□ 0.57
VCANP13611 MRPS18AP1-201ENST00000414458 589 ntBASIC18.58■□□□□ 0.57
VCANP13611 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.58■□□□□ 0.57
VCANP13611 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.58■□□□□ 0.57
VCANP13611 AC010507.1-201ENST00000633895 436 ntBASIC18.58■□□□□ 0.57
VCANP13611 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCANP13611 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCANP13611 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.58■□□□□ 0.56
VCANP13611 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VCANP13611 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.58■□□□□ 0.56
VCANP13611 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.58■□□□□ 0.56
VCANP13611 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.58■□□□□ 0.56
VCANP13611 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VCANP13611 AC009237.14-201ENST00000609975 1594 ntBASIC18.58■□□□□ 0.56
VCANP13611 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VCANP13611 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VCANP13611 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCANP13611 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCANP13611 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VCANP13611 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
VCANP13611 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.58■□□□□ 0.56
VCANP13611 GPR53P-205ENST00000457298 1084 ntBASIC18.58■□□□□ 0.56
VCANP13611 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.58■□□□□ 0.56
VCANP13611 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.57■□□□□ 0.56
VCANP13611 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.57■□□□□ 0.56
VCANP13611 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 AC148477.5-201ENST00000625164 1645 ntBASIC18.57■□□□□ 0.56
VCANP13611 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
VCANP13611 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.57■□□□□ 0.56
VCANP13611 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.57■□□□□ 0.56
VCANP13611 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VCANP13611 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 SIGLEC16-201ENST00000599858 1437 ntBASIC18.57■□□□□ 0.56
VCANP13611 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VCANP13611 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.57■□□□□ 0.56
VCANP13611 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.56■□□□□ 0.56
VCANP13611 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.56■□□□□ 0.56
VCANP13611 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.56■□□□□ 0.56
VCANP13611 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms