Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim3Q9R1R2 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim3Q9R1R2 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim3Q9R1R2 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim3Q9R1R2 Gm11175-201ENSMUST00000116172 543 ntBASIC20.96■□□□□ 0.95
Trim3Q9R1R2 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Trim3Q9R1R2 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Trim3Q9R1R2 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.95
Trim3Q9R1R2 Gm45364-201ENSMUST00000210883 159 ntBASIC20.95■□□□□ 0.94
Trim3Q9R1R2 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.95■□□□□ 0.94
Trim3Q9R1R2 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.94■□□□□ 0.94
Trim3Q9R1R2 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim3Q9R1R2 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Trim3Q9R1R2 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim3Q9R1R2 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim3Q9R1R2 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim3Q9R1R2 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim3Q9R1R2 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.92■□□□□ 0.94
Trim3Q9R1R2 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim3Q9R1R2 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim3Q9R1R2 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim3Q9R1R2 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC20.91■□□□□ 0.94
Trim3Q9R1R2 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim3Q9R1R2 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim3Q9R1R2 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim3Q9R1R2 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim3Q9R1R2 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.9■□□□□ 0.94
Trim3Q9R1R2 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim3Q9R1R2 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.9■□□□□ 0.94
Trim3Q9R1R2 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Trim3Q9R1R2 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Trim3Q9R1R2 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim3Q9R1R2 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim3Q9R1R2 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim3Q9R1R2 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.89■□□□□ 0.94
Trim3Q9R1R2 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.89■□□□□ 0.94
Trim3Q9R1R2 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.89■□□□□ 0.93
Trim3Q9R1R2 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim3Q9R1R2 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim3Q9R1R2 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim3Q9R1R2 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim3Q9R1R2 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim3Q9R1R2 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
Trim3Q9R1R2 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim3Q9R1R2 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim3Q9R1R2 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim3Q9R1R2 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim3Q9R1R2 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trim3Q9R1R2 Mir6538-201ENSMUST00000183713 110 ntBASIC20.87■□□□□ 0.93
Trim3Q9R1R2 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim3Q9R1R2 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim3Q9R1R2 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim3Q9R1R2 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim3Q9R1R2 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim3Q9R1R2 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim3Q9R1R2 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim3Q9R1R2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim3Q9R1R2 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim3Q9R1R2 Gm9812-201ENSMUST00000061934 968 ntBASIC20.85■□□□□ 0.93
Trim3Q9R1R2 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim3Q9R1R2 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim3Q9R1R2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim3Q9R1R2 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.84■□□□□ 0.93
Trim3Q9R1R2 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim3Q9R1R2 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim3Q9R1R2 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim3Q9R1R2 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Trim3Q9R1R2 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.84■□□□□ 0.93
Trim3Q9R1R2 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim3Q9R1R2 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim3Q9R1R2 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim3Q9R1R2 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim3Q9R1R2 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim3Q9R1R2 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim3Q9R1R2 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim3Q9R1R2 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim3Q9R1R2 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Trim3Q9R1R2 Scarna2-201ENSMUST00000157560 414 ntBASIC20.82■□□□□ 0.92
Trim3Q9R1R2 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim3Q9R1R2 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Trim3Q9R1R2 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim3Q9R1R2 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim3Q9R1R2 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim3Q9R1R2 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.81■□□□□ 0.92
Trim3Q9R1R2 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms