Protein–RNA interactions for Protein: Q8CG47

Smc4, Structural maintenance of chromosomes protein 4, mousemouse

Predictions only

Length 1,286 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc4Q8CG47 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Smc4Q8CG47 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Smc4Q8CG47 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Smc4Q8CG47 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
Smc4Q8CG47 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
Smc4Q8CG47 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC27.92■■■□□ 2.06
Smc4Q8CG47 Gm10420-201ENSMUST00000121713 882 ntBASIC27.91■■■□□ 2.06
Smc4Q8CG47 Gm5067-201ENSMUST00000170449 1009 ntBASIC27.91■■■□□ 2.06
Smc4Q8CG47 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC27.91■■■□□ 2.06
Smc4Q8CG47 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Smc4Q8CG47 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Smc4Q8CG47 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Smc4Q8CG47 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC27.9■■■□□ 2.06
Smc4Q8CG47 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Smc4Q8CG47 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC27.89■■■□□ 2.06
Smc4Q8CG47 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Smc4Q8CG47 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Smc4Q8CG47 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
Smc4Q8CG47 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Smc4Q8CG47 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
Smc4Q8CG47 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Smc4Q8CG47 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Smc4Q8CG47 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC27.88■■■□□ 2.05
Smc4Q8CG47 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Smc4Q8CG47 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Smc4Q8CG47 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC27.87■■■□□ 2.05
Smc4Q8CG47 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC27.87■■■□□ 2.05
Smc4Q8CG47 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
Smc4Q8CG47 AC117769.4-201ENSMUST00000225679 685 ntBASIC27.86■■■□□ 2.05
Smc4Q8CG47 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
Smc4Q8CG47 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Smc4Q8CG47 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC27.85■■■□□ 2.05
Smc4Q8CG47 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
Smc4Q8CG47 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC27.85■■■□□ 2.05
Smc4Q8CG47 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
Smc4Q8CG47 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
Smc4Q8CG47 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
Smc4Q8CG47 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
Smc4Q8CG47 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC27.84■■■□□ 2.05
Smc4Q8CG47 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC27.84■■■□□ 2.05
Smc4Q8CG47 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC27.83■■■□□ 2.05
Smc4Q8CG47 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Smc4Q8CG47 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Smc4Q8CG47 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC27.81■■■□□ 2.04
Smc4Q8CG47 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Smc4Q8CG47 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Smc4Q8CG47 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC27.81■■■□□ 2.04
Smc4Q8CG47 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Smc4Q8CG47 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC27.8■■■□□ 2.04
Smc4Q8CG47 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Smc4Q8CG47 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Smc4Q8CG47 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC27.79■■■□□ 2.04
Smc4Q8CG47 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
Smc4Q8CG47 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Smc4Q8CG47 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.04
Smc4Q8CG47 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Smc4Q8CG47 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Smc4Q8CG47 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Smc4Q8CG47 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Smc4Q8CG47 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC27.78■■■□□ 2.04
Smc4Q8CG47 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Smc4Q8CG47 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
Smc4Q8CG47 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC27.78■■■□□ 2.04
Smc4Q8CG47 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC27.78■■■□□ 2.04
Smc4Q8CG47 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC27.77■■■□□ 2.04
Smc4Q8CG47 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Smc4Q8CG47 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Smc4Q8CG47 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
Smc4Q8CG47 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC27.76■■■□□ 2.03
Smc4Q8CG47 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Smc4Q8CG47 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Smc4Q8CG47 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC27.75■■■□□ 2.03
Smc4Q8CG47 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC27.74■■■□□ 2.03
Smc4Q8CG47 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Smc4Q8CG47 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Smc4Q8CG47 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
Smc4Q8CG47 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Smc4Q8CG47 AC164433.2-201ENSMUST00000226346 1701 ntBASIC27.72■■■□□ 2.03
Smc4Q8CG47 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC27.71■■■□□ 2.03
Smc4Q8CG47 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC27.7■■■□□ 2.03
Smc4Q8CG47 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Smc4Q8CG47 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC27.7■■■□□ 2.03
Smc4Q8CG47 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Smc4Q8CG47 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Smc4Q8CG47 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC27.7■■■□□ 2.02
Smc4Q8CG47 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC27.69■■■□□ 2.02
Smc4Q8CG47 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC27.69■■■□□ 2.02
Smc4Q8CG47 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Smc4Q8CG47 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC27.68■■■□□ 2.02
Smc4Q8CG47 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Smc4Q8CG47 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
Smc4Q8CG47 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Smc4Q8CG47 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC27.67■■■□□ 2.02
Smc4Q8CG47 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Smc4Q8CG47 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Smc4Q8CG47 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
Smc4Q8CG47 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC27.66■■■□□ 2.02
Smc4Q8CG47 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC27.65■■■□□ 2.02
Smc4Q8CG47 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
Smc4Q8CG47 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms