Protein–RNA interactions for Protein: P62960

Ybx1, Nuclease-sensitive element-binding protein 1, mousemouse

Known RBP Predictions only

Length 322 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ybx1P62960 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ybx1P62960 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Ybx1P62960 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ybx1P62960 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
Ybx1P62960 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ybx1P62960 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC23.34■■□□□ 1.33
Ybx1P62960 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Ybx1P62960 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Ybx1P62960 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC23.33■■□□□ 1.33
Ybx1P62960 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ybx1P62960 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Ybx1P62960 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Ybx1P62960 Gm22567-201ENSMUST00000175542 342 ntBASIC23.33■■□□□ 1.33
Ybx1P62960 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
Ybx1P62960 Gm4419-202ENSMUST00000226239 1431 ntBASIC23.33■■□□□ 1.32
Ybx1P62960 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ybx1P62960 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.32■■□□□ 1.32
Ybx1P62960 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC23.32■■□□□ 1.32
Ybx1P62960 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Ybx1P62960 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Ybx1P62960 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ybx1P62960 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ybx1P62960 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ybx1P62960 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ybx1P62960 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
Ybx1P62960 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ybx1P62960 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ybx1P62960 Gm15546-201ENSMUST00000122095 826 ntBASIC23.3■■□□□ 1.32
Ybx1P62960 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Ybx1P62960 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Ybx1P62960 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Ybx1P62960 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ybx1P62960 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Ybx1P62960 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
Ybx1P62960 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ybx1P62960 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ybx1P62960 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC23.27■■□□□ 1.32
Ybx1P62960 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC23.27■■□□□ 1.32
Ybx1P62960 Gm13238-201ENSMUST00000117655 780 ntBASIC23.26■■□□□ 1.31
Ybx1P62960 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC23.26■■□□□ 1.31
Ybx1P62960 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ybx1P62960 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Ybx1P62960 Gm5522-201ENSMUST00000189483 1242 ntBASIC23.25■■□□□ 1.31
Ybx1P62960 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ybx1P62960 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ybx1P62960 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ybx1P62960 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Ybx1P62960 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC23.24■■□□□ 1.31
Ybx1P62960 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ybx1P62960 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ybx1P62960 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC23.23■■□□□ 1.31
Ybx1P62960 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Ybx1P62960 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ybx1P62960 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
Ybx1P62960 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.22■■□□□ 1.31
Ybx1P62960 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ybx1P62960 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ybx1P62960 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Ybx1P62960 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ybx1P62960 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ybx1P62960 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Ybx1P62960 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC23.2■■□□□ 1.3
Ybx1P62960 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
Ybx1P62960 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ybx1P62960 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Ybx1P62960 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC23.19■■□□□ 1.3
Ybx1P62960 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Ybx1P62960 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ybx1P62960 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ybx1P62960 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC23.18■■□□□ 1.3
Ybx1P62960 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ybx1P62960 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ybx1P62960 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ybx1P62960 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ybx1P62960 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.16■■□□□ 1.3
Ybx1P62960 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ybx1P62960 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ybx1P62960 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ybx1P62960 Nsd1-203ENSMUST00000224156 1149 ntBASIC23.16■■□□□ 1.3
Ybx1P62960 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ybx1P62960 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ybx1P62960 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Ybx1P62960 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ybx1P62960 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ybx1P62960 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ybx1P62960 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ybx1P62960 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Ybx1P62960 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC23.13■■□□□ 1.29
Ybx1P62960 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
Ybx1P62960 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ybx1P62960 AC093043.1-201ENSMUST00000226700 898 ntBASIC23.13■■□□□ 1.29
Ybx1P62960 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ybx1P62960 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ybx1P62960 Gm43566-201ENSMUST00000196851 808 ntBASIC23.12■■□□□ 1.29
Ybx1P62960 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC23.12■■□□□ 1.29
Ybx1P62960 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC23.12■■□□□ 1.29
Ybx1P62960 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.12■■□□□ 1.29
Ybx1P62960 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ybx1P62960 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ybx1P62960 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 159.3 ms