Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.22■□□□□ 0.83
USP38Q8NB14 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
USP38Q8NB14 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP38Q8NB14 PMS2P2-201ENST00000425039 1128 ntBASIC20.22■□□□□ 0.83
USP38Q8NB14 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.22■□□□□ 0.83
USP38Q8NB14 GUSBP12-201ENST00000513727 720 ntBASIC20.22■□□□□ 0.83
USP38Q8NB14 KRT18P41-201ENST00000518924 1277 ntBASIC20.22■□□□□ 0.83
USP38Q8NB14 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.22■□□□□ 0.83
USP38Q8NB14 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.22■□□□□ 0.83
USP38Q8NB14 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.22■□□□□ 0.83
USP38Q8NB14 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
USP38Q8NB14 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP38Q8NB14 PMS2P7-201ENST00000506558 1336 ntBASIC20.22■□□□□ 0.83
USP38Q8NB14 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.22■□□□□ 0.83
USP38Q8NB14 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP38Q8NB14 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP38Q8NB14 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP38Q8NB14 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.22■□□□□ 0.83
USP38Q8NB14 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
USP38Q8NB14 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
USP38Q8NB14 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
USP38Q8NB14 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.21■□□□□ 0.83
USP38Q8NB14 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.21■□□□□ 0.83
USP38Q8NB14 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.21■□□□□ 0.83
USP38Q8NB14 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.21■□□□□ 0.83
USP38Q8NB14 Z69720.1-201ENST00000601483 472 ntBASIC20.21■□□□□ 0.83
USP38Q8NB14 AC055717.3-201ENST00000622967 595 ntBASIC20.21■□□□□ 0.83
USP38Q8NB14 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 HEIH-201ENST00000623091 1652 ntBASIC20.21■□□□□ 0.83
USP38Q8NB14 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.21■□□□□ 0.83
USP38Q8NB14 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.21■□□□□ 0.83
USP38Q8NB14 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.21■□□□□ 0.83
USP38Q8NB14 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.21■□□□□ 0.83
USP38Q8NB14 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.21■□□□□ 0.83
USP38Q8NB14 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP38Q8NB14 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.2■□□□□ 0.82
USP38Q8NB14 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP38Q8NB14 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
USP38Q8NB14 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP38Q8NB14 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
USP38Q8NB14 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP38Q8NB14 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP38Q8NB14 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP38Q8NB14 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP38Q8NB14 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.2■□□□□ 0.82
USP38Q8NB14 MIR940-201ENST00000401276 94 ntBASIC20.2■□□□□ 0.82
USP38Q8NB14 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.2■□□□□ 0.82
USP38Q8NB14 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.2■□□□□ 0.82
USP38Q8NB14 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.2■□□□□ 0.82
USP38Q8NB14 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP38Q8NB14 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
USP38Q8NB14 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.2■□□□□ 0.82
USP38Q8NB14 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.2■□□□□ 0.82
USP38Q8NB14 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP38Q8NB14 AC233702.3-201ENST00000578656 1387 ntBASIC20.2■□□□□ 0.82
USP38Q8NB14 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.19■□□□□ 0.82
USP38Q8NB14 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.19■□□□□ 0.82
USP38Q8NB14 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.19■□□□□ 0.82
USP38Q8NB14 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
USP38Q8NB14 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
USP38Q8NB14 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
USP38Q8NB14 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.19■□□□□ 0.82
USP38Q8NB14 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.19■□□□□ 0.82
USP38Q8NB14 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
USP38Q8NB14 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.19■□□□□ 0.82
USP38Q8NB14 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP38Q8NB14 KRT8P50-201ENST00000562022 1438 ntBASIC20.19■□□□□ 0.82
USP38Q8NB14 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.18■□□□□ 0.82
USP38Q8NB14 AL357033.4-201ENST00000617703 1807 ntBASIC20.18■□□□□ 0.82
USP38Q8NB14 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms