Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.32■□□□□ 0.36
MSX2P35548 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
MSX2P35548 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.32■□□□□ 0.36
MSX2P35548 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.32■□□□□ 0.36
MSX2P35548 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.32■□□□□ 0.36
MSX2P35548 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.32■□□□□ 0.36
MSX2P35548 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.32■□□□□ 0.36
MSX2P35548 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.32■□□□□ 0.36
MSX2P35548 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.32■□□□□ 0.36
MSX2P35548 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.32■□□□□ 0.36
MSX2P35548 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.32■□□□□ 0.36
MSX2P35548 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.32■□□□□ 0.36
MSX2P35548 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MSX2P35548 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
MSX2P35548 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
MSX2P35548 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX2P35548 AL109659.2-201ENST00000606809 1674 ntBASIC17.32■□□□□ 0.36
MSX2P35548 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.32■□□□□ 0.36
MSX2P35548 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.31■□□□□ 0.36
MSX2P35548 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.31■□□□□ 0.36
MSX2P35548 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.31■□□□□ 0.36
MSX2P35548 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
MSX2P35548 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.31■□□□□ 0.36
MSX2P35548 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
MSX2P35548 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
MSX2P35548 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSX2P35548 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.31■□□□□ 0.36
MSX2P35548 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.3■□□□□ 0.36
MSX2P35548 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
MSX2P35548 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.3■□□□□ 0.36
MSX2P35548 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.3■□□□□ 0.36
MSX2P35548 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
MSX2P35548 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.3■□□□□ 0.36
MSX2P35548 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.3■□□□□ 0.36
MSX2P35548 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.3■□□□□ 0.36
MSX2P35548 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.3■□□□□ 0.36
MSX2P35548 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 KRT18P55-202ENST00000578578 1546 ntBASIC17.3■□□□□ 0.36
MSX2P35548 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.3■□□□□ 0.36
MSX2P35548 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 KRT8P50-201ENST00000562022 1438 ntBASIC17.3■□□□□ 0.36
MSX2P35548 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
MSX2P35548 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MSX2P35548 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms