Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
LIMK1P53667 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIMK1P53667 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMK1P53667 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMK1P53667 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMK1P53667 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LIMK1P53667 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LIMK1P53667 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMK1P53667 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMK1P53667 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.91■□□□□ 0.46
LIMK1P53667 RNA5SP416-201ENST00000516838 111 ntBASIC17.91■□□□□ 0.46
LIMK1P53667 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMK1P53667 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMK1P53667 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMK1P53667 AC021087.4-201ENST00000563761 564 ntBASIC17.91■□□□□ 0.46
LIMK1P53667 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.91■□□□□ 0.46
LIMK1P53667 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMK1P53667 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LIMK1P53667 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIMK1P53667 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMK1P53667 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMK1P53667 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMK1P53667 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMK1P53667 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LIMK1P53667 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMK1P53667 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LIMK1P53667 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMK1P53667 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMK1P53667 RNA5SP415-201ENST00000517246 115 ntBASIC17.9■□□□□ 0.46
LIMK1P53667 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMK1P53667 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMK1P53667 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMK1P53667 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMK1P53667 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 KRT18P28-201ENST00000453838 1332 ntBASIC17.9■□□□□ 0.46
LIMK1P53667 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMK1P53667 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIMK1P53667 TP73-AS1-210ENST00000637775 1455 ntBASIC17.89■□□□□ 0.45
LIMK1P53667 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMK1P53667 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMK1P53667 CYMP-203ENST00000474680 1263 ntBASIC17.89■□□□□ 0.45
LIMK1P53667 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.89■□□□□ 0.45
LIMK1P53667 AC092910.1-201ENST00000482027 1129 ntBASIC17.89■□□□□ 0.45
LIMK1P53667 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMK1P53667 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.89■□□□□ 0.45
LIMK1P53667 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMK1P53667 MTDHP5-201ENST00000598980 586 ntBASIC17.89■□□□□ 0.45
LIMK1P53667 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMK1P53667 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LIMK1P53667 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMK1P53667 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.89■□□□□ 0.45
LIMK1P53667 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMK1P53667 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMK1P53667 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms