Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.99□□□□□ -0.17
COL6A5A8TX70 FAM58DP-201ENST00000428076 619 ntBASIC13.99□□□□□ -0.17
COL6A5A8TX70 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A5A8TX70 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A5A8TX70 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC13.99□□□□□ -0.17
COL6A5A8TX70 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
COL6A5A8TX70 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
COL6A5A8TX70 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A5A8TX70 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 U91328.1-201ENST00000437528 223 ntBASIC13.98□□□□□ -0.17
COL6A5A8TX70 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 ACA64.2-201ENST00000459014 129 ntBASIC13.98□□□□□ -0.17
COL6A5A8TX70 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 SERBP1P5-201ENST00000510079 1181 ntBASIC13.98□□□□□ -0.17
COL6A5A8TX70 AC096734.2-201ENST00000562054 433 ntBASIC13.98□□□□□ -0.17
COL6A5A8TX70 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 LINC00602-201ENST00000629776 2065 ntBASIC13.98□□□□□ -0.17
COL6A5A8TX70 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 AC140878.1-201ENST00000565277 250 ntBASIC13.98□□□□□ -0.17
COL6A5A8TX70 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 Z98044.1-201ENST00000632503 1764 ntBASIC13.98□□□□□ -0.17
COL6A5A8TX70 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A5A8TX70 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A5A8TX70 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 KRT18P32-201ENST00000424695 1287 ntBASIC13.97□□□□□ -0.17
COL6A5A8TX70 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 IGHV3-65-201ENST00000523210 341 ntBASIC13.97□□□□□ -0.17
COL6A5A8TX70 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 DDX43P3-201ENST00000441064 443 ntBASIC13.97□□□□□ -0.17
COL6A5A8TX70 SRP19-202ENST00000445150 833 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL6A5A8TX70 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A5A8TX70 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 AC069335.1-201ENST00000489972 472 ntBASIC13.96□□□□□ -0.17
COL6A5A8TX70 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms