Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL4A1P02462 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL4A1P02462 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL4A1P02462 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL4A1P02462 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC22.15■■□□□ 1.14
COL4A1P02462 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL4A1P02462 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC22.14■■□□□ 1.14
COL4A1P02462 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC22.14■■□□□ 1.14
COL4A1P02462 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.14
COL4A1P02462 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC22.14■■□□□ 1.14
COL4A1P02462 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL4A1P02462 CD63-204ENST00000546939 779 ntTSL 3 BASIC22.14■■□□□ 1.14
COL4A1P02462 SP100-208ENST00000427101 1922 ntTSL 2 BASIC22.14■■□□□ 1.14
COL4A1P02462 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL4A1P02462 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL4A1P02462 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC22.14■■□□□ 1.14
COL4A1P02462 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
COL4A1P02462 AC104109.2-201ENST00000602919 1418 ntBASIC22.14■■□□□ 1.14
COL4A1P02462 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL4A1P02462 PHGDH-209ENST00000641074 1780 ntBASIC22.14■■□□□ 1.13
COL4A1P02462 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL4A1P02462 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL4A1P02462 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL4A1P02462 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
COL4A1P02462 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC22.14■■□□□ 1.13
COL4A1P02462 AC092910.1-201ENST00000482027 1129 ntBASIC22.14■■□□□ 1.13
COL4A1P02462 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC22.14■■□□□ 1.13
COL4A1P02462 NKAPP1-205ENST00000585790 367 ntBASIC22.14■■□□□ 1.13
COL4A1P02462 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC22.13■■□□□ 1.13
COL4A1P02462 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 SNCG-201ENST00000348795 684 ntTSL 2 BASIC22.13■■□□□ 1.13
COL4A1P02462 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC22.13■■□□□ 1.13
COL4A1P02462 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 FABP5-202ENST00000396359 986 ntTSL 5 BASIC22.13■■□□□ 1.13
COL4A1P02462 RAB17-203ENST00000409576 466 ntTSL 3 BASIC22.13■■□□□ 1.13
COL4A1P02462 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC22.13■■□□□ 1.13
COL4A1P02462 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC22.13■■□□□ 1.13
COL4A1P02462 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
COL4A1P02462 OR7E14P-202ENST00000530490 1290 ntBASIC22.13■■□□□ 1.13
COL4A1P02462 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC22.13■■□□□ 1.13
COL4A1P02462 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 RNF151-202ENST00000569210 853 ntTSL 2 BASIC22.13■■□□□ 1.13
COL4A1P02462 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
COL4A1P02462 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC22.13■■□□□ 1.13
COL4A1P02462 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 MTDHP4-201ENST00000600287 670 ntBASIC22.13■■□□□ 1.13
COL4A1P02462 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A1P02462 AC008735.5-201ENST00000623544 497 ntBASIC22.13■■□□□ 1.13
COL4A1P02462 AL356309.3-201ENST00000624132 1934 ntBASIC22.12■■□□□ 1.13
COL4A1P02462 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A1P02462 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A1P02462 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC22.12■■□□□ 1.13
COL4A1P02462 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A1P02462 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A1P02462 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
COL4A1P02462 LBH-204ENST00000406087 559 ntTSL 4 BASIC22.12■■□□□ 1.13
COL4A1P02462 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC22.12■■□□□ 1.13
COL4A1P02462 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC22.12■■□□□ 1.13
COL4A1P02462 NMU-202ENST00000505262 693 ntTSL 3 BASIC22.12■■□□□ 1.13
COL4A1P02462 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC22.12■■□□□ 1.13
COL4A1P02462 AC092865.5-201ENST00000545435 363 ntBASIC22.12■■□□□ 1.13
COL4A1P02462 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC22.12■■□□□ 1.13
COL4A1P02462 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A1P02462 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A1P02462 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC22.12■■□□□ 1.13
COL4A1P02462 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC22.12■■□□□ 1.13
COL4A1P02462 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A1P02462 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC22.11■■□□□ 1.13
COL4A1P02462 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC22.11■■□□□ 1.13
COL4A1P02462 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC22.11■■□□□ 1.13
COL4A1P02462 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC22.11■■□□□ 1.13
COL4A1P02462 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC22.11■■□□□ 1.13
COL4A1P02462 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC22.11■■□□□ 1.13
COL4A1P02462 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.11■■□□□ 1.13
COL4A1P02462 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A1P02462 GMCL1P1-201ENST00000463439 1581 ntBASIC22.11■■□□□ 1.13
COL4A1P02462 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC22.11■■□□□ 1.13
COL4A1P02462 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A1P02462 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A1P02462 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A1P02462 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
COL4A1P02462 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A1P02462 CTNS-203ENST00000399306 803 ntTSL 3 BASIC22.11■■□□□ 1.13
COL4A1P02462 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC22.11■■□□□ 1.13
COL4A1P02462 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC22.11■■□□□ 1.13
COL4A1P02462 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC22.11■■□□□ 1.13
COL4A1P02462 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC22.11■■□□□ 1.13
COL4A1P02462 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A1P02462 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A1P02462 AC148477.5-201ENST00000625164 1645 ntBASIC22.1■■□□□ 1.13
COL4A1P02462 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A1P02462 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A1P02462 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC22.1■■□□□ 1.13
COL4A1P02462 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC22.1■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms