Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRIM38O00635 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM38O00635 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRIM38O00635 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM38O00635 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 MCCD1P1-208ENST00000445732 328 ntBASIC18.34■□□□□ 0.53
TRIM38O00635 TSSC2-201ENST00000450217 709 ntBASIC18.34■□□□□ 0.53
TRIM38O00635 MIR3180-5-201ENST00000583743 153 ntBASIC18.34■□□□□ 0.53
TRIM38O00635 AC092329.2-201ENST00000598402 547 ntBASIC18.34■□□□□ 0.53
TRIM38O00635 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.34■□□□□ 0.53
TRIM38O00635 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.34■□□□□ 0.53
TRIM38O00635 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.34■□□□□ 0.53
TRIM38O00635 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.34■□□□□ 0.53
TRIM38O00635 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TRIM38O00635 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM38O00635 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM38O00635 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.33■□□□□ 0.53
TRIM38O00635 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM38O00635 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM38O00635 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
TRIM38O00635 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM38O00635 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM38O00635 AC016734.2-201ENST00000624325 1377 ntBASIC18.33■□□□□ 0.53
TRIM38O00635 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.33■□□□□ 0.53
TRIM38O00635 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM38O00635 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM38O00635 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
TRIM38O00635 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM38O00635 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TRIM38O00635 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM38O00635 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
TRIM38O00635 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM38O00635 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM38O00635 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
TRIM38O00635 SEC1P-202ENST00000473944 940 ntBASIC18.33■□□□□ 0.52
TRIM38O00635 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM38O00635 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.33■□□□□ 0.52
TRIM38O00635 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.33■□□□□ 0.52
TRIM38O00635 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM38O00635 MIR3652-201ENST00000579335 131 ntBASIC18.33■□□□□ 0.52
TRIM38O00635 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM38O00635 AC079602.3-201ENST00000623931 403 ntBASIC18.33■□□□□ 0.52
TRIM38O00635 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM38O00635 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM38O00635 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM38O00635 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TRIM38O00635 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
TRIM38O00635 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM38O00635 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM38O00635 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM38O00635 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM38O00635 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM38O00635 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM38O00635 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM38O00635 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
TRIM38O00635 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
TRIM38O00635 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms