Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.11□□□□□ -0.31
PRKDCP78527 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 AL022326.1-202ENST00000641533 845 ntBASIC13.11□□□□□ -0.31
PRKDCP78527 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC13.11□□□□□ -0.31
PRKDCP78527 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
PRKDCP78527 MIR1909-201ENST00000411312 80 ntBASIC13.11□□□□□ -0.31
PRKDCP78527 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.11□□□□□ -0.31
PRKDCP78527 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC13.11□□□□□ -0.31
PRKDCP78527 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.11□□□□□ -0.31
PRKDCP78527 AL596325.1-201ENST00000563991 1082 ntBASIC13.11□□□□□ -0.31
PRKDCP78527 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 BCAR1-209ENST00000546196 1340 ntBASIC13.11□□□□□ -0.31
PRKDCP78527 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 AL163051.1-201ENST00000569214 1512 ntBASIC13.11□□□□□ -0.31
PRKDCP78527 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC13.11□□□□□ -0.31
PRKDCP78527 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.11□□□□□ -0.31
PRKDCP78527 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.11□□□□□ -0.31
PRKDCP78527 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
PRKDCP78527 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.11□□□□□ -0.31
PRKDCP78527 SERBP1P5-201ENST00000510079 1181 ntBASIC13.11□□□□□ -0.31
PRKDCP78527 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.11□□□□□ -0.31
PRKDCP78527 AC004706.3-202ENST00000621574 984 ntBASIC13.11□□□□□ -0.31
PRKDCP78527 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 FAM58DP-201ENST00000428076 619 ntBASIC13.1□□□□□ -0.31
PRKDCP78527 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.1□□□□□ -0.31
PRKDCP78527 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
PRKDCP78527 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC13.1□□□□□ -0.31
PRKDCP78527 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.1□□□□□ -0.31
PRKDCP78527 LINC02560-201ENST00000596379 459 ntBASIC13.1□□□□□ -0.31
PRKDCP78527 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 AC009154.2-201ENST00000621177 724 ntBASIC13.1□□□□□ -0.31
PRKDCP78527 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 AC148477.5-201ENST00000625164 1645 ntBASIC13.1□□□□□ -0.31
PRKDCP78527 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC13.1□□□□□ -0.31
PRKDCP78527 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
PRKDCP78527 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
PRKDCP78527 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
PRKDCP78527 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.1□□□□□ -0.31
PRKDCP78527 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
PRKDCP78527 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
PRKDCP78527 U91328.1-201ENST00000437528 223 ntBASIC13.09□□□□□ -0.31
PRKDCP78527 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 SPDYE22P-201ENST00000582158 798 ntBASIC13.09□□□□□ -0.31
PRKDCP78527 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
PRKDCP78527 AC084346.2-201ENST00000607097 949 ntBASIC13.09□□□□□ -0.31
PRKDCP78527 AC010654.1-201ENST00000615722 808 ntBASIC13.09□□□□□ -0.31
PRKDCP78527 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.09□□□□□ -0.31
PRKDCP78527 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.09□□□□□ -0.31
PRKDCP78527 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC13.09□□□□□ -0.31
PRKDCP78527 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC13.09□□□□□ -0.31
PRKDCP78527 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms