Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.02■□□□□ 0.64
CDX2Q99626 KRT19P2-202ENST00000557173 1012 ntBASIC19.02■□□□□ 0.64
CDX2Q99626 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.02■□□□□ 0.64
CDX2Q99626 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC19.02■□□□□ 0.64
CDX2Q99626 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
CDX2Q99626 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDX2Q99626 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CDX2Q99626 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.02■□□□□ 0.63
CDX2Q99626 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
CDX2Q99626 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX2Q99626 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX2Q99626 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX2Q99626 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX2Q99626 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX2Q99626 IGLL3P-201ENST00000412472 434 ntBASIC19.01■□□□□ 0.63
CDX2Q99626 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.01■□□□□ 0.63
CDX2Q99626 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 AP005018.1-201ENST00000525475 301 ntBASIC19.01■□□□□ 0.63
CDX2Q99626 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.01■□□□□ 0.63
CDX2Q99626 AC091812.2-201ENST00000619081 385 ntBASIC19.01■□□□□ 0.63
CDX2Q99626 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX2Q99626 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX2Q99626 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 PMPCAP1-201ENST00000508114 1576 ntBASIC19.01■□□□□ 0.63
CDX2Q99626 AC006504.4-201ENST00000592118 1568 ntBASIC19.01■□□□□ 0.63
CDX2Q99626 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
CDX2Q99626 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX2Q99626 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
CDX2Q99626 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 AL512408.1-201ENST00000569378 2000 ntBASIC19■□□□□ 0.63
CDX2Q99626 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CDX2Q99626 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19■□□□□ 0.63
CDX2Q99626 HNRNPFP1-201ENST00000391730 1133 ntBASIC19■□□□□ 0.63
CDX2Q99626 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19■□□□□ 0.63
CDX2Q99626 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 ELK2BP-201ENST00000415014 1224 ntBASIC19■□□□□ 0.63
CDX2Q99626 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19■□□□□ 0.63
CDX2Q99626 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19■□□□□ 0.63
CDX2Q99626 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CDX2Q99626 AC074386.1-202ENST00000463561 864 ntBASIC19■□□□□ 0.63
CDX2Q99626 AC067863.1-201ENST00000494933 530 ntBASIC19■□□□□ 0.63
CDX2Q99626 IGHV3-65-201ENST00000523210 341 ntBASIC19■□□□□ 0.63
CDX2Q99626 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19■□□□□ 0.63
CDX2Q99626 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19■□□□□ 0.63
CDX2Q99626 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
CDX2Q99626 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19■□□□□ 0.63
CDX2Q99626 AL589182.2-201ENST00000619332 1049 ntBASIC19■□□□□ 0.63
CDX2Q99626 AC004706.3-202ENST00000621574 984 ntBASIC19■□□□□ 0.63
CDX2Q99626 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 AC068587.9-201ENST00000641814 219 ntBASIC19■□□□□ 0.63
CDX2Q99626 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19■□□□□ 0.63
CDX2Q99626 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CDX2Q99626 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.99■□□□□ 0.63
CDX2Q99626 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CDX2Q99626 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CDX2Q99626 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CDX2Q99626 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CDX2Q99626 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CDX2Q99626 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CDX2Q99626 AP002414.1-201ENST00000391405 1147 ntBASIC18.99■□□□□ 0.63
CDX2Q99626 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.99■□□□□ 0.63
CDX2Q99626 BASP1P1-201ENST00000430708 665 ntBASIC18.99■□□□□ 0.63
CDX2Q99626 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CDX2Q99626 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.99■□□□□ 0.63
CDX2Q99626 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.99■□□□□ 0.63
CDX2Q99626 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.99■□□□□ 0.63
CDX2Q99626 AC015911.4-201ENST00000588022 1070 ntBASIC18.99■□□□□ 0.63
CDX2Q99626 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CDX2Q99626 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.99■□□□□ 0.63
CDX2Q99626 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CDX2Q99626 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CDX2Q99626 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDX2Q99626 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDX2Q99626 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.98■□□□□ 0.63
CDX2Q99626 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
CDX2Q99626 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CDX2Q99626 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDX2Q99626 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDX2Q99626 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDX2Q99626 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.98■□□□□ 0.63
CDX2Q99626 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDX2Q99626 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms