Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 AC064836.3-201ENST00000607928 673 ntBASIC19.3■□□□□ 0.68
CHD9Q3L8U1 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHD9Q3L8U1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 COX20P2-201ENST00000452636 358 ntBASIC19.28■□□□□ 0.68
CHD9Q3L8U1 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 AC068587.9-201ENST00000641814 219 ntBASIC19.28■□□□□ 0.68
CHD9Q3L8U1 AL499627.1-201ENST00000569373 2188 ntBASIC19.28■□□□□ 0.68
CHD9Q3L8U1 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 SDHAP2-201ENST00000455183 2001 ntBASIC19.28■□□□□ 0.68
CHD9Q3L8U1 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 MKNK2P1-201ENST00000437526 628 ntBASIC19.28■□□□□ 0.68
CHD9Q3L8U1 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 AL049812.1-201ENST00000432563 2267 ntBASIC19.28■□□□□ 0.68
CHD9Q3L8U1 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.28■□□□□ 0.68
CHD9Q3L8U1 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 AL513190.1-201ENST00000621254 727 ntBASIC19.27■□□□□ 0.68
CHD9Q3L8U1 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.27■□□□□ 0.68
CHD9Q3L8U1 LINC00602-201ENST00000629776 2065 ntBASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms