Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 AC004832.2-201ENST00000426397 482 ntBASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 AC083906.6-201ENST00000641366 219 ntBASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 AL353692.3-201ENST00000407031 1396 ntBASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 MIR5100-201ENST00000579544 119 ntBASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC34.67■■■■□ 3.14
SHROOM4Q9ULL8 AC104109.2-201ENST00000602919 1418 ntBASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 USP39-202ENST00000409025 1946 ntTSL 5 BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC34.66■■■■□ 3.14
SHROOM4Q9ULL8 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 AC005082.1-201ENST00000413042 2259 ntBASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
SHROOM4Q9ULL8 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 DHDH-204ENST00000523250 634 ntTSL 5 BASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 Z83851.2-201ENST00000609564 659 ntBASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 AC079781.4-201ENST00000641908 219 ntBASIC34.64■■■■□ 3.14
SHROOM4Q9ULL8 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 DDT-203ENST00000403754 569 ntTSL 3 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 DDT-206ENST00000430101 573 ntTSL 2 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 GZMM-202ENST00000592501 941 ntTSL 3 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC34.63■■■■□ 3.13
SHROOM4Q9ULL8 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 AC011840.4-201ENST00000578471 627 ntBASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 AL163051.1-201ENST00000569214 1512 ntBASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
SHROOM4Q9ULL8 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 MIR940-201ENST00000401276 94 ntBASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 PAM16-208ENST00000573553 722 ntTSL 2 BASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 PAN3-AS1-201ENST00000563843 1351 ntBASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms