Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
MSX2P35548 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
MSX2P35548 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
MSX2P35548 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.5■□□□□ 0.39
MSX2P35548 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
MSX2P35548 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.5■□□□□ 0.39
MSX2P35548 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.5■□□□□ 0.39
MSX2P35548 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.5■□□□□ 0.39
MSX2P35548 Z85996.1-201ENST00000494644 937 ntBASIC17.5■□□□□ 0.39
MSX2P35548 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
MSX2P35548 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
MSX2P35548 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 PHGDH-209ENST00000641074 1780 ntBASIC17.5■□□□□ 0.39
MSX2P35548 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.5■□□□□ 0.39
MSX2P35548 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSX2P35548 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.5■□□□□ 0.39
MSX2P35548 UBALD1-205ENST00000590891 2641 ntBASIC17.5■□□□□ 0.39
MSX2P35548 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
MSX2P35548 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
MSX2P35548 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.49■□□□□ 0.39
MSX2P35548 AP001094.4-201ENST00000579008 2176 ntBASIC17.49■□□□□ 0.39
MSX2P35548 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 KRT8P3-201ENST00000519669 1449 ntBASIC17.49■□□□□ 0.39
MSX2P35548 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.49■□□□□ 0.39
MSX2P35548 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.49■□□□□ 0.39
MSX2P35548 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
MSX2P35548 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.49■□□□□ 0.39
MSX2P35548 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.49■□□□□ 0.39
MSX2P35548 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.49■□□□□ 0.39
MSX2P35548 AC097658.1-201ENST00000475555 843 ntBASIC17.49■□□□□ 0.39
MSX2P35548 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.49■□□□□ 0.39
MSX2P35548 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.49■□□□□ 0.39
MSX2P35548 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.49■□□□□ 0.39
MSX2P35548 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.49■□□□□ 0.39
MSX2P35548 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
MSX2P35548 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
MSX2P35548 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
MSX2P35548 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
MSX2P35548 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.49■□□□□ 0.39
MSX2P35548 AC006116.8-202ENST00000587620 1550 ntBASIC17.49■□□□□ 0.39
MSX2P35548 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSX2P35548 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
MSX2P35548 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.48■□□□□ 0.39
MSX2P35548 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 RCC2P3-201ENST00000418112 1537 ntBASIC17.48■□□□□ 0.39
MSX2P35548 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
MSX2P35548 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
MSX2P35548 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 AC026185.1-201ENST00000445748 174 ntBASIC17.48■□□□□ 0.39
MSX2P35548 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.48■□□□□ 0.39
MSX2P35548 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.48■□□□□ 0.39
MSX2P35548 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.48■□□□□ 0.39
MSX2P35548 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.48■□□□□ 0.39
MSX2P35548 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.48■□□□□ 0.39
MSX2P35548 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.48■□□□□ 0.39
MSX2P35548 AC092437.1-201ENST00000624794 1048 ntBASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms