Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Sdc1P18828 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC12.69□□□□□ -0.38
Sdc1P18828 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC12.69□□□□□ -0.38
Sdc1P18828 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC12.69□□□□□ -0.38
Sdc1P18828 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC12.69□□□□□ -0.38
Sdc1P18828 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC12.69□□□□□ -0.38
Sdc1P18828 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sdc1P18828 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Sdc1P18828 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC12.68□□□□□ -0.38
Sdc1P18828 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC12.68□□□□□ -0.38
Sdc1P18828 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 AC122769.4-201ENSMUST00000228166 901 ntBASIC12.68□□□□□ -0.38
Sdc1P18828 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sdc1P18828 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC12.68□□□□□ -0.38
Sdc1P18828 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Sdc1P18828 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sdc1P18828 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC12.67□□□□□ -0.38
Sdc1P18828 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC12.67□□□□□ -0.38
Sdc1P18828 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
Sdc1P18828 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Sdc1P18828 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sdc1P18828 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Sdc1P18828 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC12.67□□□□□ -0.38
Sdc1P18828 Gm42642-201ENSMUST00000200683 355 ntBASIC12.67□□□□□ -0.38
Sdc1P18828 Gm18421-201ENSMUST00000204122 625 ntBASIC12.67□□□□□ -0.38
Sdc1P18828 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC12.67□□□□□ -0.38
Sdc1P18828 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Sdc1P18828 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms