Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.3■■□□□ 1
CDKL5O76039 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.3■■□□□ 1
CDKL5O76039 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
CDKL5O76039 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.3■■□□□ 1
CDKL5O76039 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.3■■□□□ 1
CDKL5O76039 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDKL5O76039 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDKL5O76039 AC010203.1-204ENST00000548782 407 ntBASIC21.3■■□□□ 1
CDKL5O76039 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.3■■□□□ 1
CDKL5O76039 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.3■■□□□ 1
CDKL5O76039 AL031432.5-201ENST00000641059 760 ntBASIC21.3■■□□□ 1
CDKL5O76039 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CDKL5O76039 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CDKL5O76039 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDKL5O76039 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.3■■□□□ 1
CDKL5O76039 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.3■■□□□ 1
CDKL5O76039 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDKL5O76039 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDKL5O76039 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.3■■□□□ 1
CDKL5O76039 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDKL5O76039 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDKL5O76039 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CDKL5O76039 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
CDKL5O76039 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 NOC2LP1-202ENST00000452600 2235 ntBASIC21.29■■□□□ 1
CDKL5O76039 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
CDKL5O76039 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CDKL5O76039 PHGDH-209ENST00000641074 1780 ntBASIC21.29■■□□□ 1
CDKL5O76039 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
CDKL5O76039 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.29■■□□□ 1
CDKL5O76039 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.29■■□□□ 1
CDKL5O76039 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.29■■□□□ 1
CDKL5O76039 AC034232.1-201ENST00000506026 1064 ntBASIC21.29■■□□□ 1
CDKL5O76039 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.29■■□□□ 1
CDKL5O76039 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.29■■□□□ 1
CDKL5O76039 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.29■■□□□ 1
CDKL5O76039 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 AC007613.1-201ENST00000572811 2597 ntBASIC21.29■■□□□ 1
CDKL5O76039 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CDKL5O76039 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDKL5O76039 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.28■■□□□ 1
CDKL5O76039 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.28■■□□□ 1
CDKL5O76039 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CDKL5O76039 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.28■■□□□ 1
CDKL5O76039 AL137013.1-201ENST00000432946 1228 ntBASIC21.28■■□□□ 1
CDKL5O76039 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CDKL5O76039 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
CDKL5O76039 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.28■■□□□ 1
CDKL5O76039 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CDKL5O76039 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.28■■□□□ 1
CDKL5O76039 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.28■■□□□ 1
CDKL5O76039 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CDKL5O76039 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.27■■□□□ 1
CDKL5O76039 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 AL096828.2-201ENST00000567259 1965 ntBASIC21.27■■□□□ 1
CDKL5O76039 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 AL024508.2-201ENST00000607749 1894 ntBASIC21.27■■□□□ 1
CDKL5O76039 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.27■■□□□ 1
CDKL5O76039 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.27■■□□□ 1
CDKL5O76039 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 COX11P1-201ENST00000489116 835 ntBASIC21.27■■□□□ 1
CDKL5O76039 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.27■■□□□ 1
CDKL5O76039 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.27■■□□□ 1
CDKL5O76039 AC008687.5-201ENST00000593746 558 ntBASIC21.27■■□□□ 1
CDKL5O76039 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 AC140113.3-201ENST00000605663 199 ntBASIC21.27■■□□□ 1
CDKL5O76039 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms