Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.58■□□□□ 0.72
COL4A4P53420 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A4P53420 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 AC104109.2-201ENST00000602919 1418 ntBASIC19.57■□□□□ 0.72
COL4A4P53420 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL4A4P53420 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A4P53420 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A4P53420 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
COL4A4P53420 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL4A4P53420 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A4P53420 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A4P53420 LINC02084-201ENST00000606069 1096 ntBASIC19.57■□□□□ 0.72
COL4A4P53420 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL4A4P53420 AC116407.3-201ENST00000623905 1129 ntBASIC19.57■□□□□ 0.72
COL4A4P53420 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A4P53420 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.57■□□□□ 0.72
COL4A4P53420 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A4P53420 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.56■□□□□ 0.72
COL4A4P53420 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.56■□□□□ 0.72
COL4A4P53420 RPS8P6-201ENST00000426177 609 ntBASIC19.56■□□□□ 0.72
COL4A4P53420 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
COL4A4P53420 AC004967.1-201ENST00000453589 447 ntBASIC19.56■□□□□ 0.72
COL4A4P53420 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.56■□□□□ 0.72
COL4A4P53420 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
COL4A4P53420 Z83851.2-201ENST00000609564 659 ntBASIC19.56■□□□□ 0.72
COL4A4P53420 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A4P53420 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.56■□□□□ 0.72
COL4A4P53420 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL4A4P53420 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
COL4A4P53420 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A4P53420 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A4P53420 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
COL4A4P53420 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A4P53420 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL4A4P53420 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.56■□□□□ 0.72
COL4A4P53420 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A4P53420 AL591424.1-201ENST00000442569 1213 ntBASIC19.56■□□□□ 0.72
COL4A4P53420 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.56■□□□□ 0.72
COL4A4P53420 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A4P53420 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A4P53420 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A4P53420 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A4P53420 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A4P53420 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A4P53420 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A4P53420 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A4P53420 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL4A4P53420 AC007967.2-201ENST00000432613 625 ntBASIC19.55■□□□□ 0.72
COL4A4P53420 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.55■□□□□ 0.72
COL4A4P53420 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.55■□□□□ 0.72
COL4A4P53420 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A4P53420 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A4P53420 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.55■□□□□ 0.72
COL4A4P53420 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.55■□□□□ 0.72
COL4A4P53420 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A4P53420 AC027601.4-201ENST00000611259 610 ntBASIC19.55■□□□□ 0.72
COL4A4P53420 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A4P53420 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A4P53420 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A4P53420 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A4P53420 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A4P53420 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
COL4A4P53420 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL4A4P53420 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL4A4P53420 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A4P53420 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL4A4P53420 AL031598.1-201ENST00000561511 1773 ntBASIC19.54■□□□□ 0.72
COL4A4P53420 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL4A4P53420 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.54■□□□□ 0.72
COL4A4P53420 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
COL4A4P53420 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.54■□□□□ 0.72
COL4A4P53420 DNAJB3-202ENST00000449667 1266 ntBASIC19.54■□□□□ 0.72
COL4A4P53420 SART3-203ENST00000546611 1184 ntBASIC19.54■□□□□ 0.72
COL4A4P53420 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.54■□□□□ 0.72
COL4A4P53420 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.54■□□□□ 0.72
COL4A4P53420 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.54■□□□□ 0.72
COL4A4P53420 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.54■□□□□ 0.72
COL4A4P53420 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.54■□□□□ 0.72
COL4A4P53420 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms