Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC005498.2-205ENST00000593218 784 ntBASIC18.83■□□□□ 0.6
COL9A1P20849 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL9A1P20849 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.83■□□□□ 0.6
COL9A1P20849 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
COL9A1P20849 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL9A1P20849 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL9A1P20849 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.83■□□□□ 0.6
COL9A1P20849 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
COL9A1P20849 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL9A1P20849 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
COL9A1P20849 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL9A1P20849 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
COL9A1P20849 IRX1P1-201ENST00000438849 1838 ntBASIC18.82■□□□□ 0.6
COL9A1P20849 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL9A1P20849 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL9A1P20849 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
COL9A1P20849 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
COL9A1P20849 RBM17P3-201ENST00000417687 1192 ntBASIC18.82■□□□□ 0.6
COL9A1P20849 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.82■□□□□ 0.6
COL9A1P20849 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.82■□□□□ 0.6
COL9A1P20849 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.82■□□□□ 0.6
COL9A1P20849 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.82■□□□□ 0.6
COL9A1P20849 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.82■□□□□ 0.6
COL9A1P20849 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL9A1P20849 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL9A1P20849 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.82■□□□□ 0.6
COL9A1P20849 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
COL9A1P20849 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL9A1P20849 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
COL9A1P20849 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.82■□□□□ 0.6
COL9A1P20849 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
COL9A1P20849 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 FEM1AP3-201ENST00000403722 1741 ntBASIC18.81■□□□□ 0.6
COL9A1P20849 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 MRPL20P1-201ENST00000400819 433 ntBASIC18.81■□□□□ 0.6
COL9A1P20849 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL9A1P20849 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 AC096582.2-201ENST00000510860 516 ntBASIC18.81■□□□□ 0.6
COL9A1P20849 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.81■□□□□ 0.6
COL9A1P20849 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.81■□□□□ 0.6
COL9A1P20849 AC021087.4-201ENST00000563761 564 ntBASIC18.81■□□□□ 0.6
COL9A1P20849 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC18.81■□□□□ 0.6
COL9A1P20849 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.81■□□□□ 0.6
COL9A1P20849 AC005336.2-201ENST00000593183 939 ntBASIC18.81■□□□□ 0.6
COL9A1P20849 AC027612.4-201ENST00000605371 583 ntBASIC18.81■□□□□ 0.6
COL9A1P20849 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL9A1P20849 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.81■□□□□ 0.6
COL9A1P20849 HOXB1-202ENST00000577092 1414 ntBASIC18.81■□□□□ 0.6
COL9A1P20849 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.81■□□□□ 0.6
COL9A1P20849 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.81■□□□□ 0.6
COL9A1P20849 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL9A1P20849 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COL9A1P20849 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.8■□□□□ 0.6
COL9A1P20849 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.8■□□□□ 0.6
COL9A1P20849 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL9A1P20849 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.8■□□□□ 0.6
COL9A1P20849 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 KRT8P32-201ENST00000512863 1461 ntBASIC18.8■□□□□ 0.6
COL9A1P20849 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.8■□□□□ 0.6
COL9A1P20849 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.8■□□□□ 0.6
COL9A1P20849 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.8■□□□□ 0.6
COL9A1P20849 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.8■□□□□ 0.6
COL9A1P20849 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.8■□□□□ 0.6
COL9A1P20849 AC004449.1-201ENST00000564240 433 ntBASIC18.8■□□□□ 0.6
COL9A1P20849 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.8■□□□□ 0.6
COL9A1P20849 AC011840.4-201ENST00000578471 627 ntBASIC18.8■□□□□ 0.6
COL9A1P20849 GPR32P1-201ENST00000601788 811 ntBASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms