Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 AC006011.2-201ENST00000621313 1158 ntBASIC18.93■□□□□ 0.62
USP29Q9HBJ7 AC010653.2-201ENST00000623505 997 ntBASIC18.93■□□□□ 0.62
USP29Q9HBJ7 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP29Q9HBJ7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.92■□□□□ 0.62
USP29Q9HBJ7 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.92■□□□□ 0.62
USP29Q9HBJ7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 WWOX-216ENST00000569818 525 ntBASIC18.92■□□□□ 0.62
USP29Q9HBJ7 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 CR769767.2-201ENST00000622735 460 ntBASIC18.92■□□□□ 0.62
USP29Q9HBJ7 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 AC099343.3-201ENST00000605834 2503 ntBASIC18.92■□□□□ 0.62
USP29Q9HBJ7 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.92■□□□□ 0.62
USP29Q9HBJ7 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 HOXB1-202ENST00000577092 1414 ntBASIC18.91■□□□□ 0.62
USP29Q9HBJ7 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 SDHAP2-201ENST00000455183 2001 ntBASIC18.91■□□□□ 0.62
USP29Q9HBJ7 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 AC008764.6-201ENST00000595909 2069 ntBASIC18.91■□□□□ 0.62
USP29Q9HBJ7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 AL163051.1-201ENST00000569214 1512 ntBASIC18.91■□□□□ 0.62
USP29Q9HBJ7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 AK4P3-201ENST00000418260 669 ntBASIC18.91■□□□□ 0.62
USP29Q9HBJ7 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 AC007663.1-201ENST00000438948 1240 ntBASIC18.91■□□□□ 0.62
USP29Q9HBJ7 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP29Q9HBJ7 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms