Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CXCL1P09341 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CXCL1P09341 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CXCL1P09341 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CXCL1P09341 C2orf69P4-201ENST00000565394 541 ntBASIC14.28□□□□□ -0.12
CXCL1P09341 KRT18P61-201ENST00000585825 1298 ntBASIC14.28□□□□□ -0.12
CXCL1P09341 AL589743.5-201ENST00000616611 1050 ntBASIC14.28□□□□□ -0.12
CXCL1P09341 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC14.28□□□□□ -0.12
CXCL1P09341 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL1P09341 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.28□□□□□ -0.12
CXCL1P09341 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.27□□□□□ -0.12
CXCL1P09341 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
CXCL1P09341 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL1P09341 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL1P09341 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.27□□□□□ -0.12
CXCL1P09341 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL1P09341 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CXCL1P09341 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL1P09341 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL1P09341 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.27□□□□□ -0.12
CXCL1P09341 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CXCL1P09341 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL1P09341 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.27□□□□□ -0.12
CXCL1P09341 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL1P09341 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.27□□□□□ -0.12
CXCL1P09341 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CXCL1P09341 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL1P09341 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.27□□□□□ -0.12
CXCL1P09341 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.13
CXCL1P09341 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC14.27□□□□□ -0.13
CXCL1P09341 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.27□□□□□ -0.13
CXCL1P09341 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC14.27□□□□□ -0.13
CXCL1P09341 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CXCL1P09341 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.13
CXCL1P09341 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.27□□□□□ -0.13
CXCL1P09341 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.27□□□□□ -0.13
CXCL1P09341 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL1P09341 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.27□□□□□ -0.13
CXCL1P09341 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.26□□□□□ -0.13
CXCL1P09341 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
CXCL1P09341 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.26□□□□□ -0.13
CXCL1P09341 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 BET1L-204ENST00000410108 637 ntTSL 3 BASIC14.26□□□□□ -0.13
CXCL1P09341 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC14.26□□□□□ -0.13
CXCL1P09341 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC14.26□□□□□ -0.13
CXCL1P09341 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC14.26□□□□□ -0.13
CXCL1P09341 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.26□□□□□ -0.13
CXCL1P09341 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms