Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP54Q70EL1 SART3-203ENST00000546611 1184 ntBASIC24.46■■□□□ 1.51
USP54Q70EL1 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC24.46■■□□□ 1.51
USP54Q70EL1 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC24.46■■□□□ 1.51
USP54Q70EL1 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC24.46■■□□□ 1.51
USP54Q70EL1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP54Q70EL1 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP54Q70EL1 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP54Q70EL1 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP54Q70EL1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.46■■□□□ 1.51
USP54Q70EL1 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP54Q70EL1 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC24.46■■□□□ 1.51
USP54Q70EL1 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
USP54Q70EL1 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC24.46■■□□□ 1.51
USP54Q70EL1 RNPS1P1-201ENST00000507437 918 ntBASIC24.46■■□□□ 1.51
USP54Q70EL1 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC24.46■■□□□ 1.51
USP54Q70EL1 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC24.46■■□□□ 1.51
USP54Q70EL1 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC24.46■■□□□ 1.51
USP54Q70EL1 AC007952.6-201ENST00000573168 2673 ntBASIC24.46■■□□□ 1.51
USP54Q70EL1 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC24.46■■□□□ 1.51
USP54Q70EL1 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC24.46■■□□□ 1.51
USP54Q70EL1 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC24.46■■□□□ 1.51
USP54Q70EL1 AC003957.1-201ENST00000625108 2673 ntBASIC24.46■■□□□ 1.51
USP54Q70EL1 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC24.46■■□□□ 1.51
USP54Q70EL1 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
USP54Q70EL1 AF228730.7-201ENST00000641842 219 ntBASIC24.46■■□□□ 1.51
USP54Q70EL1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.51
USP54Q70EL1 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP54Q70EL1 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC24.45■■□□□ 1.5
USP54Q70EL1 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP54Q70EL1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP54Q70EL1 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP54Q70EL1 MED16-201ENST00000269814 1199 ntTSL 5 BASIC24.45■■□□□ 1.5
USP54Q70EL1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
USP54Q70EL1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP54Q70EL1 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP54Q70EL1 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC24.45■■□□□ 1.5
USP54Q70EL1 MOK-208ENST00000519058 917 ntTSL 2 BASIC24.45■■□□□ 1.5
USP54Q70EL1 KRT18P58-201ENST00000527480 1120 ntBASIC24.45■■□□□ 1.5
USP54Q70EL1 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
USP54Q70EL1 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC24.45■■□□□ 1.5
USP54Q70EL1 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC24.45■■□□□ 1.5
USP54Q70EL1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
USP54Q70EL1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC24.44■■□□□ 1.5
USP54Q70EL1 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC24.44■■□□□ 1.5
USP54Q70EL1 KRT8P47-201ENST00000604727 1398 ntBASIC24.44■■□□□ 1.5
USP54Q70EL1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC24.44■■□□□ 1.5
USP54Q70EL1 HIST2H3DP1-201ENST00000401004 416 ntBASIC24.44■■□□□ 1.5
USP54Q70EL1 ABCD1P5-201ENST00000445663 754 ntBASIC24.44■■□□□ 1.5
USP54Q70EL1 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC24.44■■□□□ 1.5
USP54Q70EL1 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC24.44■■□□□ 1.5
USP54Q70EL1 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
USP54Q70EL1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 AP005117.1-201ENST00000584346 1413 ntBASIC24.44■■□□□ 1.5
USP54Q70EL1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC24.44■■□□□ 1.5
USP54Q70EL1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP54Q70EL1 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC24.43■■□□□ 1.5
USP54Q70EL1 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC24.43■■□□□ 1.5
USP54Q70EL1 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
USP54Q70EL1 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC24.43■■□□□ 1.5
USP54Q70EL1 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP54Q70EL1 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC24.43■■□□□ 1.5
USP54Q70EL1 AC106730.1-201ENST00000566722 1090 ntBASIC24.43■■□□□ 1.5
USP54Q70EL1 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC24.43■■□□□ 1.5
USP54Q70EL1 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC24.43■■□□□ 1.5
USP54Q70EL1 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC24.43■■□□□ 1.5
USP54Q70EL1 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC24.43■■□□□ 1.5
USP54Q70EL1 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP54Q70EL1 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
USP54Q70EL1 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP54Q70EL1 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP54Q70EL1 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP54Q70EL1 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP54Q70EL1 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
USP54Q70EL1 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC24.43■■□□□ 1.5
USP54Q70EL1 AC112698.1-201ENST00000510299 916 ntBASIC24.43■■□□□ 1.5
USP54Q70EL1 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC24.43■■□□□ 1.5
USP54Q70EL1 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC24.43■■□□□ 1.5
USP54Q70EL1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
USP54Q70EL1 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP54Q70EL1 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
USP54Q70EL1 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.42■■□□□ 1.5
USP54Q70EL1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP54Q70EL1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP54Q70EL1 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP54Q70EL1 PGAM5P1-201ENST00000518923 814 ntBASIC24.42■■□□□ 1.5
USP54Q70EL1 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC24.42■■□□□ 1.5
USP54Q70EL1 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC24.42■■□□□ 1.5
USP54Q70EL1 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC24.42■■□□□ 1.5
USP54Q70EL1 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC24.42■■□□□ 1.5
USP54Q70EL1 AC132938.6-201ENST00000623828 1655 ntBASIC24.42■■□□□ 1.5
USP54Q70EL1 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP54Q70EL1 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms