Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim39Q9ESN2 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim39Q9ESN2 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim39Q9ESN2 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim39Q9ESN2 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim39Q9ESN2 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim39Q9ESN2 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim39Q9ESN2 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim39Q9ESN2 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Trim39Q9ESN2 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim39Q9ESN2 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim39Q9ESN2 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim39Q9ESN2 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim39Q9ESN2 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim39Q9ESN2 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim39Q9ESN2 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Trim39Q9ESN2 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim39Q9ESN2 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim39Q9ESN2 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.94■□□□□ 0.94
Trim39Q9ESN2 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Trim39Q9ESN2 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Trim39Q9ESN2 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim39Q9ESN2 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim39Q9ESN2 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trim39Q9ESN2 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Trim39Q9ESN2 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Trim39Q9ESN2 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trim39Q9ESN2 Particl-201ENSMUST00000205370 1560 ntBASIC20.92■□□□□ 0.94
Trim39Q9ESN2 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim39Q9ESN2 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim39Q9ESN2 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim39Q9ESN2 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim39Q9ESN2 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim39Q9ESN2 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim39Q9ESN2 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim39Q9ESN2 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim39Q9ESN2 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim39Q9ESN2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Trim39Q9ESN2 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim39Q9ESN2 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Trim39Q9ESN2 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim39Q9ESN2 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Trim39Q9ESN2 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim39Q9ESN2 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim39Q9ESN2 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim39Q9ESN2 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim39Q9ESN2 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim39Q9ESN2 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim39Q9ESN2 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim39Q9ESN2 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim39Q9ESN2 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim39Q9ESN2 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim39Q9ESN2 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim39Q9ESN2 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.85■□□□□ 0.93
Trim39Q9ESN2 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim39Q9ESN2 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim39Q9ESN2 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim39Q9ESN2 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Trim39Q9ESN2 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim39Q9ESN2 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim39Q9ESN2 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim39Q9ESN2 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Trim39Q9ESN2 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Trim39Q9ESN2 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Trim39Q9ESN2 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim39Q9ESN2 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim39Q9ESN2 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim39Q9ESN2 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.81■□□□□ 0.92
Trim39Q9ESN2 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Trim39Q9ESN2 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim39Q9ESN2 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Trim39Q9ESN2 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim39Q9ESN2 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim39Q9ESN2 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim39Q9ESN2 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Trim39Q9ESN2 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim39Q9ESN2 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Trim39Q9ESN2 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.79■□□□□ 0.92
Trim39Q9ESN2 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20.79■□□□□ 0.92
Trim39Q9ESN2 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
Trim39Q9ESN2 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Trim39Q9ESN2 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim39Q9ESN2 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim39Q9ESN2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim39Q9ESN2 Gm37136-201ENSMUST00000194368 194 ntBASIC20.78■□□□□ 0.92
Trim39Q9ESN2 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim39Q9ESN2 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim39Q9ESN2 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim39Q9ESN2 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim39Q9ESN2 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.77■□□□□ 0.92
Trim39Q9ESN2 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim39Q9ESN2 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trim39Q9ESN2 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trim39Q9ESN2 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trim39Q9ESN2 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.76■□□□□ 0.91
Trim39Q9ESN2 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.76■□□□□ 0.91
Trim39Q9ESN2 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim39Q9ESN2 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim39Q9ESN2 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim39Q9ESN2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms