Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Cldnd1Q9CQX5 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
Cldnd1Q9CQX5 Gm43566-201ENSMUST00000196851 808 ntBASIC23.89■■□□□ 1.41
Cldnd1Q9CQX5 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
Cldnd1Q9CQX5 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Cldnd1Q9CQX5 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
Cldnd1Q9CQX5 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Cldnd1Q9CQX5 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
Cldnd1Q9CQX5 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
Cldnd1Q9CQX5 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Cldnd1Q9CQX5 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC23.87■■□□□ 1.41
Cldnd1Q9CQX5 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Cldnd1Q9CQX5 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC23.87■■□□□ 1.41
Cldnd1Q9CQX5 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC23.86■■□□□ 1.41
Cldnd1Q9CQX5 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC23.86■■□□□ 1.41
Cldnd1Q9CQX5 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Cldnd1Q9CQX5 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC23.86■■□□□ 1.41
Cldnd1Q9CQX5 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.86■■□□□ 1.41
Cldnd1Q9CQX5 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Cldnd1Q9CQX5 Gm14117-201ENSMUST00000122417 843 ntBASIC23.85■■□□□ 1.41
Cldnd1Q9CQX5 Gm45102-201ENSMUST00000207427 857 ntBASIC23.85■■□□□ 1.41
Cldnd1Q9CQX5 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Cldnd1Q9CQX5 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Cldnd1Q9CQX5 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Cldnd1Q9CQX5 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC23.84■■□□□ 1.41
Cldnd1Q9CQX5 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Cldnd1Q9CQX5 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Cldnd1Q9CQX5 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.83■■□□□ 1.41
Cldnd1Q9CQX5 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC23.83■■□□□ 1.4
Cldnd1Q9CQX5 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Cldnd1Q9CQX5 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cldnd1Q9CQX5 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Cldnd1Q9CQX5 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cldnd1Q9CQX5 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cldnd1Q9CQX5 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cldnd1Q9CQX5 Gm45444-201ENSMUST00000211394 898 ntBASIC23.8■■□□□ 1.4
Cldnd1Q9CQX5 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cldnd1Q9CQX5 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.8■■□□□ 1.4
Cldnd1Q9CQX5 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.8■■□□□ 1.4
Cldnd1Q9CQX5 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Cldnd1Q9CQX5 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cldnd1Q9CQX5 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cldnd1Q9CQX5 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cldnd1Q9CQX5 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cldnd1Q9CQX5 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Cldnd1Q9CQX5 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cldnd1Q9CQX5 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cldnd1Q9CQX5 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Gm42501-201ENSMUST00000200220 1026 ntBASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.75■■□□□ 1.39
Cldnd1Q9CQX5 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Cldnd1Q9CQX5 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.74■■□□□ 1.39
Cldnd1Q9CQX5 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Cldnd1Q9CQX5 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Cldnd1Q9CQX5 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Cldnd1Q9CQX5 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cldnd1Q9CQX5 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cldnd1Q9CQX5 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cldnd1Q9CQX5 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
Cldnd1Q9CQX5 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Cldnd1Q9CQX5 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cldnd1Q9CQX5 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC23.71■■□□□ 1.39
Cldnd1Q9CQX5 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC23.71■■□□□ 1.39
Cldnd1Q9CQX5 Gm9959-201ENSMUST00000068277 390 ntBASIC23.71■■□□□ 1.39
Cldnd1Q9CQX5 Zxda-201ENSMUST00000117281 2621 ntBASIC23.71■■□□□ 1.39
Cldnd1Q9CQX5 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Cldnd1Q9CQX5 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Cldnd1Q9CQX5 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cldnd1Q9CQX5 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC23.69■■□□□ 1.38
Cldnd1Q9CQX5 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cldnd1Q9CQX5 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cldnd1Q9CQX5 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
Cldnd1Q9CQX5 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cldnd1Q9CQX5 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.68■■□□□ 1.38
Cldnd1Q9CQX5 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cldnd1Q9CQX5 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
Cldnd1Q9CQX5 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Cldnd1Q9CQX5 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Cldnd1Q9CQX5 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Cldnd1Q9CQX5 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cldnd1Q9CQX5 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC23.65■■□□□ 1.38
Cldnd1Q9CQX5 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cldnd1Q9CQX5 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Cldnd1Q9CQX5 Gm18755-201ENSMUST00000218030 1099 ntBASIC23.64■■□□□ 1.37
Cldnd1Q9CQX5 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.63■■□□□ 1.37
Cldnd1Q9CQX5 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Cldnd1Q9CQX5 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.63■■□□□ 1.37
Cldnd1Q9CQX5 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.63■■□□□ 1.37
Cldnd1Q9CQX5 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
Cldnd1Q9CQX5 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC23.62■■□□□ 1.37
Cldnd1Q9CQX5 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Cldnd1Q9CQX5 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Cldnd1Q9CQX5 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Cldnd1Q9CQX5 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms