Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Gm25239-201ENSMUST00000174915 86 ntBASIC41.61■■■■■ 4.25
Cldnd1Q9CQX5 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.71■■■■□ 3.79
Cldnd1Q9CQX5 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
Cldnd1Q9CQX5 Gm24109-201ENSMUST00000175489 103 ntBASIC36.31■■■■□ 3.4
Cldnd1Q9CQX5 Gm15042-201ENSMUST00000120212 883 ntBASIC35.93■■■■□ 3.34
Cldnd1Q9CQX5 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
Cldnd1Q9CQX5 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.15■■■■□ 3.22
Cldnd1Q9CQX5 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
Cldnd1Q9CQX5 Gm15045-201ENSMUST00000117359 883 ntBASIC35.02■■■■□ 3.2
Cldnd1Q9CQX5 Gm23366-201ENSMUST00000175022 89 ntBASIC34.71■■■■□ 3.15
Cldnd1Q9CQX5 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Cldnd1Q9CQX5 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.02■■■■□ 3.04
Cldnd1Q9CQX5 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.72■■■□□ 2.99
Cldnd1Q9CQX5 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.66■■■□□ 2.98
Cldnd1Q9CQX5 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
Cldnd1Q9CQX5 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
Cldnd1Q9CQX5 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Cldnd1Q9CQX5 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.27■■■□□ 2.92
Cldnd1Q9CQX5 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Cldnd1Q9CQX5 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
Cldnd1Q9CQX5 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.04■■■□□ 2.88
Cldnd1Q9CQX5 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
Cldnd1Q9CQX5 Gm25238-201ENSMUST00000174914 89 ntBASIC32.98■■■□□ 2.87
Cldnd1Q9CQX5 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Cldnd1Q9CQX5 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.57■■■□□ 2.8
Cldnd1Q9CQX5 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.31■■■□□ 2.76
Cldnd1Q9CQX5 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Cldnd1Q9CQX5 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
Cldnd1Q9CQX5 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
Cldnd1Q9CQX5 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Cldnd1Q9CQX5 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.13■■■□□ 2.73
Cldnd1Q9CQX5 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
Cldnd1Q9CQX5 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.71
Cldnd1Q9CQX5 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Cldnd1Q9CQX5 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.88■■■□□ 2.69
Cldnd1Q9CQX5 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.86■■■□□ 2.69
Cldnd1Q9CQX5 Gm25262-201ENSMUST00000174934 133 ntBASIC31.85■■■□□ 2.69
Cldnd1Q9CQX5 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
Cldnd1Q9CQX5 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Cldnd1Q9CQX5 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.6■■■□□ 2.65
Cldnd1Q9CQX5 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.57■■■□□ 2.64
Cldnd1Q9CQX5 Gm27325-201ENSMUST00000175467 74 ntBASIC31.39■■■□□ 2.62
Cldnd1Q9CQX5 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.37■■■□□ 2.61
Cldnd1Q9CQX5 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.33■■■□□ 2.61
Cldnd1Q9CQX5 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Cldnd1Q9CQX5 Gm26115-201ENSMUST00000175605 87 ntBASIC31.25■■■□□ 2.59
Cldnd1Q9CQX5 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.21■■■□□ 2.59
Cldnd1Q9CQX5 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
Cldnd1Q9CQX5 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cldnd1Q9CQX5 Rab21-202ENSMUST00000218831 843 ntBASIC31.12■■■□□ 2.57
Cldnd1Q9CQX5 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.1■■■□□ 2.57
Cldnd1Q9CQX5 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Cldnd1Q9CQX5 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
Cldnd1Q9CQX5 Gm8109-201ENSMUST00000194076 746 ntBASIC31.01■■■□□ 2.55
Cldnd1Q9CQX5 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cldnd1Q9CQX5 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Cldnd1Q9CQX5 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Cldnd1Q9CQX5 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Cldnd1Q9CQX5 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Cldnd1Q9CQX5 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.84■■■□□ 2.53
Cldnd1Q9CQX5 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Cldnd1Q9CQX5 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.69■■■□□ 2.5
Cldnd1Q9CQX5 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
Cldnd1Q9CQX5 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.64■■■□□ 2.5
Cldnd1Q9CQX5 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.54■■■□□ 2.48
Cldnd1Q9CQX5 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Cldnd1Q9CQX5 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Cldnd1Q9CQX5 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
Cldnd1Q9CQX5 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Cldnd1Q9CQX5 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.3■■■□□ 2.44
Cldnd1Q9CQX5 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Cldnd1Q9CQX5 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.27■■■□□ 2.44
Cldnd1Q9CQX5 Psd-208ENSMUST00000224556 2034 ntBASIC30.27■■■□□ 2.44
Cldnd1Q9CQX5 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
Cldnd1Q9CQX5 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cldnd1Q9CQX5 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.21■■■□□ 2.43
Cldnd1Q9CQX5 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cldnd1Q9CQX5 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cldnd1Q9CQX5 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.11■■■□□ 2.41
Cldnd1Q9CQX5 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.1■■■□□ 2.41
Cldnd1Q9CQX5 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cldnd1Q9CQX5 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.03■■■□□ 2.4
Cldnd1Q9CQX5 Gm24804-201ENSMUST00000174982 85 ntBASIC29.93■■■□□ 2.38
Cldnd1Q9CQX5 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC29.92■■■□□ 2.38
Cldnd1Q9CQX5 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
Cldnd1Q9CQX5 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.88■■■□□ 2.37
Cldnd1Q9CQX5 Gm27322-201ENSMUST00000184007 104 ntBASIC29.85■■■□□ 2.37
Cldnd1Q9CQX5 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Cldnd1Q9CQX5 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.81■■■□□ 2.36
Cldnd1Q9CQX5 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
Cldnd1Q9CQX5 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.78■■■□□ 2.36
Cldnd1Q9CQX5 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Cldnd1Q9CQX5 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
Cldnd1Q9CQX5 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29.7■■■□□ 2.35
Cldnd1Q9CQX5 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.7■■■□□ 2.34
Cldnd1Q9CQX5 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC29.68■■■□□ 2.34
Cldnd1Q9CQX5 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Cldnd1Q9CQX5 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
Cldnd1Q9CQX5 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
Cldnd1Q9CQX5 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms