Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC28.5■■■□□ 2.15
Ddx58Q6Q899 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Ddx58Q6Q899 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC28.49■■■□□ 2.15
Ddx58Q6Q899 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
Ddx58Q6Q899 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC28.49■■■□□ 2.15
Ddx58Q6Q899 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Ddx58Q6Q899 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ddx58Q6Q899 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Ddx58Q6Q899 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Ddx58Q6Q899 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC28.46■■■□□ 2.15
Ddx58Q6Q899 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Ddx58Q6Q899 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
Ddx58Q6Q899 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Ddx58Q6Q899 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Ddx58Q6Q899 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC28.46■■■□□ 2.15
Ddx58Q6Q899 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Ddx58Q6Q899 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Ddx58Q6Q899 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
Ddx58Q6Q899 AC122428.3-201ENSMUST00000215551 2290 ntBASIC28.45■■■□□ 2.15
Ddx58Q6Q899 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC28.45■■■□□ 2.14
Ddx58Q6Q899 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC28.44■■■□□ 2.14
Ddx58Q6Q899 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Ddx58Q6Q899 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC28.44■■■□□ 2.14
Ddx58Q6Q899 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Ddx58Q6Q899 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Ddx58Q6Q899 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Ddx58Q6Q899 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
Ddx58Q6Q899 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
Ddx58Q6Q899 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Ddx58Q6Q899 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
Ddx58Q6Q899 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC28.42■■■□□ 2.14
Ddx58Q6Q899 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Ddx58Q6Q899 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Ddx58Q6Q899 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Ddx58Q6Q899 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC28.41■■■□□ 2.14
Ddx58Q6Q899 Gm44428-201ENSMUST00000204474 874 ntBASIC28.41■■■□□ 2.14
Ddx58Q6Q899 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC28.41■■■□□ 2.14
Ddx58Q6Q899 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC28.4■■■□□ 2.14
Ddx58Q6Q899 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC28.4■■■□□ 2.14
Ddx58Q6Q899 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
Ddx58Q6Q899 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddx58Q6Q899 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddx58Q6Q899 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddx58Q6Q899 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddx58Q6Q899 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC28.37■■■□□ 2.13
Ddx58Q6Q899 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ddx58Q6Q899 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Ddx58Q6Q899 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Ddx58Q6Q899 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ddx58Q6Q899 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Ddx58Q6Q899 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Ddx58Q6Q899 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ddx58Q6Q899 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ddx58Q6Q899 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ddx58Q6Q899 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
Ddx58Q6Q899 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC28.34■■■□□ 2.13
Ddx58Q6Q899 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ddx58Q6Q899 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Ddx58Q6Q899 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
Ddx58Q6Q899 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
Ddx58Q6Q899 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC28.32■■■□□ 2.12
Ddx58Q6Q899 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx58Q6Q899 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ddx58Q6Q899 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Ddx58Q6Q899 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
Ddx58Q6Q899 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Ddx58Q6Q899 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC28.31■■■□□ 2.12
Ddx58Q6Q899 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Ddx58Q6Q899 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ddx58Q6Q899 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ddx58Q6Q899 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx58Q6Q899 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx58Q6Q899 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx58Q6Q899 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx58Q6Q899 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx58Q6Q899 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC28.29■■■□□ 2.12
Ddx58Q6Q899 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC28.29■■■□□ 2.12
Ddx58Q6Q899 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ddx58Q6Q899 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Ddx58Q6Q899 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC28.28■■■□□ 2.12
Ddx58Q6Q899 Gm10420-201ENSMUST00000121713 882 ntBASIC28.28■■■□□ 2.12
Ddx58Q6Q899 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ddx58Q6Q899 Gm5067-201ENSMUST00000170449 1009 ntBASIC28.27■■■□□ 2.12
Ddx58Q6Q899 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
Ddx58Q6Q899 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
Ddx58Q6Q899 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Ddx58Q6Q899 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx58Q6Q899 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx58Q6Q899 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx58Q6Q899 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx58Q6Q899 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC28.24■■■□□ 2.11
Ddx58Q6Q899 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx58Q6Q899 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx58Q6Q899 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx58Q6Q899 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx58Q6Q899 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Ddx58Q6Q899 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC28.22■■■□□ 2.11
Ddx58Q6Q899 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddx58Q6Q899 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ddx58Q6Q899 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms