Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Nkx3-1P97436 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Nkx3-1P97436 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Nkx3-1P97436 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Nkx3-1P97436 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Nkx3-1P97436 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Nkx3-1P97436 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Nkx3-1P97436 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
Nkx3-1P97436 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Nkx3-1P97436 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.76■□□□□ 0.75
Nkx3-1P97436 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Nkx3-1P97436 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Nkx3-1P97436 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.75■□□□□ 0.75
Nkx3-1P97436 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Nkx3-1P97436 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Nkx3-1P97436 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nkx3-1P97436 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Nkx3-1P97436 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nkx3-1P97436 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nkx3-1P97436 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.72■□□□□ 0.75
Nkx3-1P97436 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nkx3-1P97436 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nkx3-1P97436 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nkx3-1P97436 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Nkx3-1P97436 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nkx3-1P97436 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
Nkx3-1P97436 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nkx3-1P97436 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nkx3-1P97436 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Nkx3-1P97436 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Nkx3-1P97436 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Nkx3-1P97436 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nkx3-1P97436 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC19.69■□□□□ 0.74
Nkx3-1P97436 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nkx3-1P97436 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.68■□□□□ 0.74
Nkx3-1P97436 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC19.68■□□□□ 0.74
Nkx3-1P97436 Gm44428-201ENSMUST00000204474 874 ntBASIC19.68■□□□□ 0.74
Nkx3-1P97436 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nkx3-1P97436 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Nkx3-1P97436 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Nkx3-1P97436 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Nkx3-1P97436 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.67■□□□□ 0.74
Nkx3-1P97436 Gm5921-201ENSMUST00000075898 882 ntBASIC19.67■□□□□ 0.74
Nkx3-1P97436 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Nkx3-1P97436 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Nkx3-1P97436 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Nkx3-1P97436 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Nkx3-1P97436 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nkx3-1P97436 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.66■□□□□ 0.74
Nkx3-1P97436 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nkx3-1P97436 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nkx3-1P97436 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Nkx3-1P97436 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Nkx3-1P97436 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Nkx3-1P97436 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nkx3-1P97436 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC19.63■□□□□ 0.73
Nkx3-1P97436 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Nkx3-1P97436 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
Nkx3-1P97436 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.63■□□□□ 0.73
Nkx3-1P97436 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx3-1P97436 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx3-1P97436 Gm4419-202ENSMUST00000226239 1431 ntBASIC19.62■□□□□ 0.73
Nkx3-1P97436 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.62■□□□□ 0.73
Nkx3-1P97436 Gm5812-201ENSMUST00000061073 957 ntBASIC19.62■□□□□ 0.73
Nkx3-1P97436 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx3-1P97436 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx3-1P97436 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Nkx3-1P97436 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Nkx3-1P97436 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Nkx3-1P97436 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nkx3-1P97436 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nkx3-1P97436 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC19.6■□□□□ 0.73
Nkx3-1P97436 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Nkx3-1P97436 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nkx3-1P97436 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.6■□□□□ 0.73
Nkx3-1P97436 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nkx3-1P97436 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nkx3-1P97436 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nkx3-1P97436 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Nkx3-1P97436 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nkx3-1P97436 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Nkx3-1P97436 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Nkx3-1P97436 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nkx3-1P97436 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Nkx3-1P97436 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nkx3-1P97436 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nkx3-1P97436 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nkx3-1P97436 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nkx3-1P97436 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nkx3-1P97436 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Nkx3-1P97436 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Nkx3-1P97436 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Nkx3-1P97436 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Nkx3-1P97436 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Nkx3-1P97436 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Nkx3-1P97436 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
Nkx3-1P97436 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.55■□□□□ 0.72
Nkx3-1P97436 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Nkx3-1P97436 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Nkx3-1P97436 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms