Protein–RNA interactions for Protein: P22518

Clk1, Dual specificity protein kinase CLK1, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk1P22518 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk1P22518 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
Clk1P22518 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk1P22518 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk1P22518 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clk1P22518 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clk1P22518 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Clk1P22518 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.85■□□□□ 0.93
Clk1P22518 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Clk1P22518 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clk1P22518 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clk1P22518 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clk1P22518 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clk1P22518 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clk1P22518 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clk1P22518 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clk1P22518 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Clk1P22518 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clk1P22518 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Clk1P22518 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.83■□□□□ 0.92
Clk1P22518 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Clk1P22518 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clk1P22518 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.82■□□□□ 0.92
Clk1P22518 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clk1P22518 Gm4799-201ENSMUST00000095396 657 ntBASIC20.82■□□□□ 0.92
Clk1P22518 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clk1P22518 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clk1P22518 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk1P22518 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Clk1P22518 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Clk1P22518 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.81■□□□□ 0.92
Clk1P22518 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.81■□□□□ 0.92
Clk1P22518 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Clk1P22518 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk1P22518 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Clk1P22518 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk1P22518 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk1P22518 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Clk1P22518 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clk1P22518 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clk1P22518 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Clk1P22518 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clk1P22518 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.78■□□□□ 0.92
Clk1P22518 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clk1P22518 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clk1P22518 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clk1P22518 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Clk1P22518 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clk1P22518 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
Clk1P22518 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clk1P22518 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clk1P22518 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clk1P22518 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Clk1P22518 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Clk1P22518 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Clk1P22518 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Clk1P22518 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Clk1P22518 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clk1P22518 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Clk1P22518 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.76■□□□□ 0.91
Clk1P22518 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.76■□□□□ 0.91
Clk1P22518 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clk1P22518 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
Clk1P22518 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clk1P22518 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Clk1P22518 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.75■□□□□ 0.91
Clk1P22518 Notumos-201ENSMUST00000151998 2659 ntBASIC20.75■□□□□ 0.91
Clk1P22518 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk1P22518 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk1P22518 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk1P22518 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk1P22518 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.74■□□□□ 0.91
Clk1P22518 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk1P22518 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk1P22518 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clk1P22518 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clk1P22518 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk1P22518 Mir3960-201ENSMUST00000198213 73 ntBASIC20.72■□□□□ 0.91
Clk1P22518 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk1P22518 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Clk1P22518 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Clk1P22518 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk1P22518 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Clk1P22518 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.71■□□□□ 0.91
Clk1P22518 Gm9812-201ENSMUST00000061934 968 ntBASIC20.71■□□□□ 0.91
Clk1P22518 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clk1P22518 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clk1P22518 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Clk1P22518 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Clk1P22518 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.7■□□□□ 0.9
Clk1P22518 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Clk1P22518 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clk1P22518 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clk1P22518 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Clk1P22518 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk1P22518 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
Clk1P22518 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk1P22518 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.68■□□□□ 0.9
Clk1P22518 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk1P22518 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms