Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
Chd3B1AR17 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Chd3B1AR17 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Chd3B1AR17 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC22.57■■□□□ 1.2
Chd3B1AR17 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Chd3B1AR17 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Chd3B1AR17 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Chd3B1AR17 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Chd3B1AR17 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Chd3B1AR17 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Chd3B1AR17 AC153911.1-201ENSMUST00000220378 758 ntBASIC22.57■■□□□ 1.2
Chd3B1AR17 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Chd3B1AR17 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Chd3B1AR17 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Chd3B1AR17 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Chd3B1AR17 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC22.56■■□□□ 1.2
Chd3B1AR17 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Chd3B1AR17 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Chd3B1AR17 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Chd3B1AR17 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Chd3B1AR17 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC22.55■■□□□ 1.2
Chd3B1AR17 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC22.54■■□□□ 1.2
Chd3B1AR17 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chd3B1AR17 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chd3B1AR17 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chd3B1AR17 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC22.53■■□□□ 1.2
Chd3B1AR17 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chd3B1AR17 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chd3B1AR17 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC22.53■■□□□ 1.2
Chd3B1AR17 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC22.52■■□□□ 1.2
Chd3B1AR17 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chd3B1AR17 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Chd3B1AR17 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Chd3B1AR17 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Chd3B1AR17 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC22.5■■□□□ 1.19
Chd3B1AR17 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Chd3B1AR17 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chd3B1AR17 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chd3B1AR17 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Chd3B1AR17 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chd3B1AR17 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC22.47■■□□□ 1.19
Chd3B1AR17 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chd3B1AR17 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chd3B1AR17 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chd3B1AR17 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chd3B1AR17 Gm10420-201ENSMUST00000121713 882 ntBASIC22.46■■□□□ 1.19
Chd3B1AR17 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Chd3B1AR17 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Chd3B1AR17 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC22.45■■□□□ 1.18
Chd3B1AR17 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Chd3B1AR17 Gm14523-201ENSMUST00000117260 558 ntBASIC22.45■■□□□ 1.18
Chd3B1AR17 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Chd3B1AR17 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Chd3B1AR17 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Chd3B1AR17 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Chd3B1AR17 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Chd3B1AR17 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Chd3B1AR17 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Chd3B1AR17 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Chd3B1AR17 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC22.42■■□□□ 1.18
Chd3B1AR17 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC22.42■■□□□ 1.18
Chd3B1AR17 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chd3B1AR17 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chd3B1AR17 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chd3B1AR17 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Chd3B1AR17 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC22.42■■□□□ 1.18
Chd3B1AR17 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Chd3B1AR17 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Chd3B1AR17 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Chd3B1AR17 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC22.41■■□□□ 1.18
Chd3B1AR17 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Chd3B1AR17 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC22.4■■□□□ 1.18
Chd3B1AR17 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chd3B1AR17 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chd3B1AR17 AC153890.1-201ENSMUST00000220021 2469 ntBASIC22.4■■□□□ 1.18
Chd3B1AR17 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chd3B1AR17 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Chd3B1AR17 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC22.39■■□□□ 1.17
Chd3B1AR17 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
Chd3B1AR17 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Chd3B1AR17 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC22.38■■□□□ 1.17
Chd3B1AR17 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Chd3B1AR17 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Chd3B1AR17 Gm44428-201ENSMUST00000204474 874 ntBASIC22.38■■□□□ 1.17
Chd3B1AR17 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chd3B1AR17 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chd3B1AR17 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chd3B1AR17 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Chd3B1AR17 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chd3B1AR17 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chd3B1AR17 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chd3B1AR17 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC22.37■■□□□ 1.17
Chd3B1AR17 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chd3B1AR17 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chd3B1AR17 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
Chd3B1AR17 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chd3B1AR17 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Chd3B1AR17 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Chd3B1AR17 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Chd3B1AR17 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC22.35■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms