Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav11A0A0B4J1J9 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Trav11A0A0B4J1J9 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav11A0A0B4J1J9 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav11A0A0B4J1J9 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC15.55■□□□□ 0.08
Trav11A0A0B4J1J9 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav11A0A0B4J1J9 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Trav11A0A0B4J1J9 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav11A0A0B4J1J9 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav11A0A0B4J1J9 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC15.54■□□□□ 0.08
Trav11A0A0B4J1J9 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav11A0A0B4J1J9 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav11A0A0B4J1J9 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav11A0A0B4J1J9 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav11A0A0B4J1J9 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav11A0A0B4J1J9 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav11A0A0B4J1J9 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trav11A0A0B4J1J9 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav11A0A0B4J1J9 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trav11A0A0B4J1J9 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trav11A0A0B4J1J9 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Trav11A0A0B4J1J9 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trav11A0A0B4J1J9 Zfp131-205ENSMUST00000223812 663 ntBASIC15.52■□□□□ 0.08
Trav11A0A0B4J1J9 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav11A0A0B4J1J9 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav11A0A0B4J1J9 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav11A0A0B4J1J9 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Trav11A0A0B4J1J9 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav11A0A0B4J1J9 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav11A0A0B4J1J9 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Trav11A0A0B4J1J9 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav11A0A0B4J1J9 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav11A0A0B4J1J9 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav11A0A0B4J1J9 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Trav11A0A0B4J1J9 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav11A0A0B4J1J9 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav11A0A0B4J1J9 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav11A0A0B4J1J9 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trav11A0A0B4J1J9 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav11A0A0B4J1J9 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav11A0A0B4J1J9 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav11A0A0B4J1J9 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
Trav11A0A0B4J1J9 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav11A0A0B4J1J9 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav11A0A0B4J1J9 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC15.49■□□□□ 0.07
Trav11A0A0B4J1J9 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Gm42699-201ENSMUST00000198104 1657 ntBASIC15.48■□□□□ 0.07
Trav11A0A0B4J1J9 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav11A0A0B4J1J9 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
Trav11A0A0B4J1J9 Gm24970-201ENSMUST00000175582 82 ntBASIC15.47■□□□□ 0.07
Trav11A0A0B4J1J9 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav11A0A0B4J1J9 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav11A0A0B4J1J9 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
Trav11A0A0B4J1J9 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC15.46■□□□□ 0.07
Trav11A0A0B4J1J9 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav11A0A0B4J1J9 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav11A0A0B4J1J9 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav11A0A0B4J1J9 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC15.46■□□□□ 0.07
Trav11A0A0B4J1J9 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav11A0A0B4J1J9 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav11A0A0B4J1J9 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trav11A0A0B4J1J9 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Trav11A0A0B4J1J9 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav11A0A0B4J1J9 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav11A0A0B4J1J9 Gm9397-201ENSMUST00000200125 605 ntBASIC15.45■□□□□ 0.06
Trav11A0A0B4J1J9 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trav11A0A0B4J1J9 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav11A0A0B4J1J9 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav11A0A0B4J1J9 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trav11A0A0B4J1J9 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trav11A0A0B4J1J9 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trav11A0A0B4J1J9 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trav11A0A0B4J1J9 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trav11A0A0B4J1J9 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trav11A0A0B4J1J9 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trav11A0A0B4J1J9 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Trav11A0A0B4J1J9 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC15.42■□□□□ 0.06
Trav11A0A0B4J1J9 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav11A0A0B4J1J9 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav11A0A0B4J1J9 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trav11A0A0B4J1J9 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trav11A0A0B4J1J9 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav11A0A0B4J1J9 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav11A0A0B4J1J9 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms