Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 FAM220CP-201ENST00000395253 831 ntBASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 AC008687.5-201ENST00000593746 558 ntBASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 ZNF259P1-201ENST00000407656 1365 ntBASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 AC073648.2-201ENST00000510116 352 ntBASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 AC096582.2-201ENST00000510860 516 ntBASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 AC139887.3-201ENST00000568585 713 ntBASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 TERC-201ENST00000602385 541 ntBASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA1Q9Y5H4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 RPS2P28-201ENST00000314255 741 ntBASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 RBM17P3-201ENST00000417687 1192 ntBASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 AC132008.2-207ENST00000454517 770 ntBASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 AC148477.8-201ENST00000624298 468 ntBASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 AC068587.9-201ENST00000641814 219 ntBASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA1Q9Y5H4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 AC243591.1-201ENST00000452967 1364 ntBASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 BX842568.4-201ENST00000421222 227 ntBASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 SCARNA2-201ENST00000458748 420 ntBASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 AC092183.1-201ENST00000469884 875 ntBASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 RPL13AP23-201ENST00000480739 586 ntBASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 POLD2P1-201ENST00000511220 997 ntBASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms