Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 ELL2P1-201ENST00000413990 1906 ntBASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 AC007274.1-201ENST00000439805 662 ntBASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 AF228730.6-201ENST00000641497 218 ntBASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 AC084121.3-201ENST00000641716 218 ntBASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 AC105233.6-201ENST00000642093 218 ntBASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 AL157384.1-201ENST00000445995 2473 ntBASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC27.81■■■□□ 2.04
COL17A1Q9UMD9 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AC125634.1-201ENST00000438758 1403 ntBASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 KATNBL1P6-202ENST00000562413 1466 ntBASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AC108751.1-201ENST00000490852 363 ntBASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AC005498.2-205ENST00000593218 784 ntBASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
COL17A1Q9UMD9 AC092667.1-201ENST00000434301 2586 ntBASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 RNF34-208ENST00000555076 593 ntTSL 3 BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 AC093512.1-201ENST00000617969 520 ntBASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL17A1Q9UMD9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 TSEN15P1-201ENST00000423257 515 ntBASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 MKNK2P1-201ENST00000437526 628 ntBASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 AL513190.1-201ENST00000621254 727 ntBASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
COL17A1Q9UMD9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 CD82-202ENST00000342935 967 ntTSL 5 BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 ETFA-208ENST00000559602 792 ntTSL 3 BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
COL17A1Q9UMD9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms