Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 MIR149-201ENST00000384879 89 ntBASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 AL845331.1-201ENST00000424978 1190 ntBASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 FOSL1P1-201ENST00000511041 816 ntBASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 AL691432.3-201ENST00000621860 400 ntBASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 MYLKP1-201ENST00000509077 1580 ntBASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 AC233702.3-201ENST00000578656 1387 ntBASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PAAF1Q9BRP4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 KRT89P-201ENST00000620027 1478 ntBASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 AC012615.1-201ENST00000565797 1299 ntBASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 AP005901.3-202ENST00000581653 237 ntBASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 AC009102.3-201ENST00000623118 1491 ntBASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PAAF1Q9BRP4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 TSPY19P-201ENST00000418461 509 ntBASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 AC246785.2-201ENST00000432512 513 ntBASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 TSPY18P-201ENST00000441642 509 ntBASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 AC074051.2-201ENST00000565115 352 ntBASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 IFNL4P1-201ENST00000607083 540 ntBASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PAAF1Q9BRP4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
PAAF1Q9BRP4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PAAF1Q9BRP4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PAAF1Q9BRP4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms