Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 CCS-201ENST00000310190 942 ntTSL 5 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 HIST2H3DP1-201ENST00000401004 416 ntBASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 GZMM-202ENST00000592501 941 ntTSL 3 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 AC116407.3-201ENST00000623905 1129 ntBASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 AL109659.2-201ENST00000606809 1674 ntBASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
CCDC88AQ3V6T2 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 AL512353.2-201ENST00000448759 1962 ntBASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 AC034236.2-201ENST00000606662 1610 ntBASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 AC007967.2-201ENST00000432613 625 ntBASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC88AQ3V6T2 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 LBH-204ENST00000406087 559 ntTSL 4 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 DHDH-204ENST00000523250 634 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC88AQ3V6T2 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 AC093484.2-201ENST00000580996 2166 ntBASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 AL032819.2-201ENST00000624543 2162 ntBASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 GPX1P2-201ENST00000429271 606 ntBASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC22.54■■□□□ 1.2
CCDC88AQ3V6T2 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 AC004832.2-201ENST00000426397 482 ntBASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 AL591424.1-201ENST00000442569 1213 ntBASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 CD63-204ENST00000546939 779 ntTSL 3 BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 MTDHP3-201ENST00000594186 672 ntBASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC22.53■■□□□ 1.2
CCDC88AQ3V6T2 AC006333.2-201ENST00000607957 2099 ntBASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms