Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LIM2P55344 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LIM2P55344 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.54■□□□□ 0.4
LIM2P55344 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LIM2P55344 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 AP000593.1-201ENST00000393668 712 ntBASIC17.54■□□□□ 0.4
LIM2P55344 AP000523.1-201ENST00000398242 1049 ntBASIC17.54■□□□□ 0.4
LIM2P55344 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.54■□□□□ 0.4
LIM2P55344 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.54■□□□□ 0.4
LIM2P55344 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.54■□□□□ 0.4
LIM2P55344 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.54■□□□□ 0.4
LIM2P55344 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LIM2P55344 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIM2P55344 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIM2P55344 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LIM2P55344 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.53■□□□□ 0.4
LIM2P55344 MYLKP1-201ENST00000509077 1580 ntBASIC17.53■□□□□ 0.4
LIM2P55344 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.53■□□□□ 0.4
LIM2P55344 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.53■□□□□ 0.4
LIM2P55344 AC126763.1-201ENST00000552015 2118 ntBASIC17.53■□□□□ 0.4
LIM2P55344 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
LIM2P55344 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 RCN1P1-201ENST00000400413 996 ntBASIC17.53■□□□□ 0.4
LIM2P55344 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
LIM2P55344 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.53■□□□□ 0.4
LIM2P55344 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
LIM2P55344 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.53■□□□□ 0.4
LIM2P55344 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.53■□□□□ 0.4
LIM2P55344 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.53■□□□□ 0.4
LIM2P55344 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.53■□□□□ 0.4
LIM2P55344 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.53■□□□□ 0.4
LIM2P55344 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
LIM2P55344 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 AC018470.1-201ENST00000624790 3129 ntBASIC17.53■□□□□ 0.4
LIM2P55344 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.53■□□□□ 0.4
LIM2P55344 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIM2P55344 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 AL354751.1-201ENST00000412768 1863 ntBASIC17.52■□□□□ 0.4
LIM2P55344 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.52■□□□□ 0.4
LIM2P55344 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.52■□□□□ 0.4
LIM2P55344 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
LIM2P55344 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.52■□□□□ 0.4
LIM2P55344 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 BX664615.1-201ENST00000443558 458 ntBASIC17.52■□□□□ 0.4
LIM2P55344 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.52■□□□□ 0.4
LIM2P55344 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIM2P55344 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.52■□□□□ 0.4
LIM2P55344 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms