Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 AC006333.2-201ENST00000607957 2099 ntBASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 URGCP-206ENST00000446958 365 ntTSL 2 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 LITAF-211ENST00000572255 516 ntTSL 4 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 NAT14-202ENST00000587400 416 ntTSL 5 BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
SHROOM4Q9ULL8 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 AC099343.3-201ENST00000605834 2503 ntBASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 KRT8P7-201ENST00000533003 1432 ntBASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 MIR564-202ENST00000385049 94 ntBASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 AC104390.1-201ENST00000555663 520 ntBASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 AC068587.9-201ENST00000641814 219 ntBASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
SHROOM4Q9ULL8 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC35.07■■■■□ 3.21
SHROOM4Q9ULL8 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC35.07■■■■□ 3.21
SHROOM4Q9ULL8 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC35.07■■■■□ 3.21
SHROOM4Q9ULL8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 AP003733.1-201ENST00000491725 852 ntBASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC35.07■■■■□ 3.2
SHROOM4Q9ULL8 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 AL691403.2-201ENST00000618460 490 ntBASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
SHROOM4Q9ULL8 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 IGHGP-201ENST00000390555 1178 ntBASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SHROOM4Q9ULL8 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 AC093909.1-201ENST00000504731 1122 ntBASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 BNIP3P18-201ENST00000593976 575 ntBASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
SHROOM4Q9ULL8 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 AC098831.1-202ENST00000438821 336 ntBASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 AL161938.1-201ENST00000569833 2180 ntBASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 HNRNPA1P28-201ENST00000424481 961 ntBASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC35.03■■■■□ 3.2
SHROOM4Q9ULL8 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 MTMR9LP-203ENST00000426597 1545 ntBASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SHROOM4Q9ULL8 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC35.02■■■■□ 3.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms