Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC14.32□□□□□ -0.12
CCDC140Q96MF4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC135050.7-201ENST00000624508 2218 ntBASIC14.31□□□□□ -0.12
CCDC140Q96MF4 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 BICD1-207ENST00000551848 1962 ntBASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC104390.1-201ENST00000555663 520 ntBASIC14.31□□□□□ -0.12
CCDC140Q96MF4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 NEK4P2-201ENST00000580004 1012 ntBASIC14.31□□□□□ -0.12
CCDC140Q96MF4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC140Q96MF4 AL163051.1-201ENST00000569214 1512 ntBASIC14.31□□□□□ -0.12
CCDC140Q96MF4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 AC010203.1-204ENST00000548782 407 ntBASIC14.3□□□□□ -0.12
CCDC140Q96MF4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 AL138966.2-201ENST00000621997 464 ntBASIC14.3□□□□□ -0.12
CCDC140Q96MF4 AC141257.4-201ENST00000634557 245 ntBASIC14.3□□□□□ -0.12
CCDC140Q96MF4 AC136944.6-201ENST00000634818 245 ntBASIC14.3□□□□□ -0.12
CCDC140Q96MF4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms