Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.4■□□□□ 0.06
VPS13CQ709C8 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 AC073648.2-201ENST00000510116 352 ntBASIC15.4■□□□□ 0.06
VPS13CQ709C8 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 AC034236.2-201ENST00000606662 1610 ntBASIC15.4■□□□□ 0.06
VPS13CQ709C8 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13CQ709C8 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VPS13CQ709C8 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 AC104390.1-201ENST00000555663 520 ntBASIC15.39■□□□□ 0.05
VPS13CQ709C8 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 IRX1P1-201ENST00000438849 1838 ntBASIC15.39■□□□□ 0.05
VPS13CQ709C8 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS13CQ709C8 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13CQ709C8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 GOLGA2P11-201ENST00000562660 1621 ntBASIC15.38■□□□□ 0.05
VPS13CQ709C8 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 SART3-203ENST00000546611 1184 ntBASIC15.38■□□□□ 0.05
VPS13CQ709C8 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 AC024563.2-201ENST00000603282 481 ntBASIC15.38■□□□□ 0.05
VPS13CQ709C8 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.38■□□□□ 0.05
VPS13CQ709C8 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS13CQ709C8 AP001269.4-201ENST00000609611 512 ntBASIC15.38■□□□□ 0.05
VPS13CQ709C8 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13CQ709C8 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms