Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGA1P17096 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGA1P17096 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGA1P17096 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
HMGA1P17096 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HMGA1P17096 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGA1P17096 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HMGA1P17096 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HMGA1P17096 AC026396.1-201ENST00000419388 421 ntBASIC19.17■□□□□ 0.66
HMGA1P17096 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HMGA1P17096 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 GUSBP12-201ENST00000513727 720 ntBASIC19.17■□□□□ 0.66
HMGA1P17096 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.17■□□□□ 0.66
HMGA1P17096 RN7SL510P-201ENST00000581311 263 ntBASIC19.17■□□□□ 0.66
HMGA1P17096 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGA1P17096 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGA1P17096 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGA1P17096 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HMGA1P17096 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGA1P17096 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGA1P17096 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGA1P17096 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGA1P17096 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGA1P17096 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
HMGA1P17096 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.16■□□□□ 0.66
HMGA1P17096 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
HMGA1P17096 AL845331.1-201ENST00000424978 1190 ntBASIC19.16■□□□□ 0.66
HMGA1P17096 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGA1P17096 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGA1P17096 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.16■□□□□ 0.66
HMGA1P17096 AL732292.2-201ENST00000609649 430 ntBASIC19.16■□□□□ 0.66
HMGA1P17096 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.16■□□□□ 0.66
HMGA1P17096 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGA1P17096 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGA1P17096 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HMGA1P17096 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGA1P17096 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGA1P17096 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGA1P17096 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HMGA1P17096 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGA1P17096 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGA1P17096 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HMGA1P17096 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGA1P17096 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 IGHV3-47-201ENST00000425060 335 ntBASIC19.15■□□□□ 0.66
HMGA1P17096 AC091607.1-201ENST00000490318 1060 ntBASIC19.15■□□□□ 0.66
HMGA1P17096 AP005901.3-202ENST00000581653 237 ntBASIC19.15■□□□□ 0.66
HMGA1P17096 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HMGA1P17096 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGA1P17096 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGA1P17096 AL024508.2-201ENST00000607749 1894 ntBASIC19.15■□□□□ 0.66
HMGA1P17096 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGA1P17096 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGA1P17096 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HMGA1P17096 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGA1P17096 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
HMGA1P17096 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGA1P17096 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGA1P17096 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.14■□□□□ 0.66
HMGA1P17096 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGA1P17096 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.14■□□□□ 0.66
HMGA1P17096 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
HMGA1P17096 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGA1P17096 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGA1P17096 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGA1P17096 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGA1P17096 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
HMGA1P17096 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGA1P17096 AC104819.1-201ENST00000504587 486 ntBASIC19.14■□□□□ 0.65
HMGA1P17096 AC113404.2-201ENST00000507884 177 ntBASIC19.14■□□□□ 0.65
HMGA1P17096 FOSL1P1-201ENST00000511041 816 ntBASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms