Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.57■□□□□ 0.4
PROM1O43490 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.57■□□□□ 0.4
PROM1O43490 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.57■□□□□ 0.4
PROM1O43490 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PROM1O43490 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.57■□□□□ 0.4
PROM1O43490 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.57■□□□□ 0.4
PROM1O43490 AC012306.2-201ENST00000609350 630 ntBASIC17.57■□□□□ 0.4
PROM1O43490 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PROM1O43490 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
PROM1O43490 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PROM1O43490 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PROM1O43490 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PROM1O43490 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 AC073592.3-201ENST00000625118 1834 ntBASIC17.56■□□□□ 0.4
PROM1O43490 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 AC020916.1-201ENST00000587762 1774 ntBASIC17.56■□□□□ 0.4
PROM1O43490 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.56■□□□□ 0.4
PROM1O43490 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PROM1O43490 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.56■□□□□ 0.4
PROM1O43490 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.56■□□□□ 0.4
PROM1O43490 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.56■□□□□ 0.4
PROM1O43490 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.56■□□□□ 0.4
PROM1O43490 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.56■□□□□ 0.4
PROM1O43490 AL512604.3-201ENST00000569583 964 ntBASIC17.56■□□□□ 0.4
PROM1O43490 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.56■□□□□ 0.4
PROM1O43490 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
PROM1O43490 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 AC097493.4-201ENST00000641197 219 ntBASIC17.56■□□□□ 0.4
PROM1O43490 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
PROM1O43490 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.56■□□□□ 0.4
PROM1O43490 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PROM1O43490 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.56■□□□□ 0.4
PROM1O43490 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PROM1O43490 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.55■□□□□ 0.4
PROM1O43490 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.55■□□□□ 0.4
PROM1O43490 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.55■□□□□ 0.4
PROM1O43490 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.55■□□□□ 0.4
PROM1O43490 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 MYLKP1-201ENST00000509077 1580 ntBASIC17.55■□□□□ 0.4
PROM1O43490 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 AP000593.1-201ENST00000393668 712 ntBASIC17.55■□□□□ 0.4
PROM1O43490 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.55■□□□□ 0.4
PROM1O43490 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.55■□□□□ 0.4
PROM1O43490 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.55■□□□□ 0.4
PROM1O43490 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.55■□□□□ 0.4
PROM1O43490 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.55■□□□□ 0.4
PROM1O43490 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.55■□□□□ 0.4
PROM1O43490 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.55■□□□□ 0.4
PROM1O43490 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 AC090340.1-201ENST00000620778 4980 ntBASIC17.55■□□□□ 0.4
PROM1O43490 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 KRT8P7-201ENST00000533003 1432 ntBASIC17.55■□□□□ 0.4
PROM1O43490 HOXB1-202ENST00000577092 1414 ntBASIC17.55■□□□□ 0.4
PROM1O43490 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PROM1O43490 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 AC090164.3-201ENST00000610780 2143 ntBASIC17.54■□□□□ 0.4
PROM1O43490 AC104581.1-202ENST00000635932 2618 ntBASIC17.54■□□□□ 0.4
PROM1O43490 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.54■□□□□ 0.4
PROM1O43490 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
PROM1O43490 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PROM1O43490 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.54■□□□□ 0.4
PROM1O43490 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms